Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0342 ATGGCTTCTAATTCTCCTCAAGTTGTTGACTGTGAGAGACTCGATATCACTGTCTTGCTCGTGGACAATGATACCACCGCTCTCTCCGTGAACGCTGGTTTTCTCAGATCATGGCAATACAAAGTTGCAACTGCTACAAGTGGTCATGAAGCTTTGAAGACTCTAAGGGAATTCAGAGGCTTCTTCGACCTCGTCATCGCCGACCTTAACATACGAGAAATGAATGGTTTTGAACTCCAAAAACGTGTCAAACGTGAATTCAATCTTCCAGTCATAATTATGTCTGGAGATGGGAGGAATCTGAAGCATGGAGCATCATATTGCATTATGAAACCAGTACAAAGAGATGACTTAAAAAATGTGTGGCAGTATGTTGTGGCTGGAAAGAGAGAGAAACTAAGAATTGTGAATGGTAGAATAGTATCAGTAAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACTCACCACCACCACGAACTGTTAATCCAGCATCGCCTAAAAAGCAAAGGAAGAAGTATTGCAAGAGAAAGAGTAGTGAGCTGATTGAGAATGAAGAACTCATATTCTGTGGTCCAAAGAGATCCAGAATTTTCTGGACTACTAATCTTCACAATCGCTTCTTGTTGGCCATAGACTACATTGGCATGGAAAAGGCAGTTCCAAGGAAGATTCTTGAGATCATGAACGTGCCAGGTTTGACCAGAGAAAATGTTTCCAGTCATTTGCAGAAGTACCGAATGTTTCTGAAGAAAATTGCAGAGAAAGGAATCCTTGATGGATTATCAGAGAAAGCTTTGAGGTCAAAGTTTGCTATAGGCCTTCCCACAGATCTCATCAGAGACCTCCAAAAGAGAGTCAATAATCATTTTCGTCATCAAGAAAATGATTATCATCAACCTTACAGCACCGTTGTGTCTAGGCCTCCAACAACCAAACCTCTTCTCACCAATCAAACCAGACTGGTTCAACCAAACCACTATAGGACCAATCATATTTACAGAAACTTCCAACAATCCCATCATCATGATCAAGCAAATCATCATCTTCATCGTCCAATTGTGAATGGAGGAGTGTTTATGACTTCTGCAAATGCCCTCATTGCAAATGGCTTGATGAGTAACTATTCCTCATCAGGGAACAATAGAAACTTGCCTTGTGGAAGCTTTGGCCTGCAACGAAGTCCTAGTCCTTATAATAACCACTATGGAACTCAACTGAACAACAATGCTTCTCTTACATTTGGTGCGTTGAATAGAGTTCAGAATGTTGGAAATACGGGTCATAGCAACAACAACAGAAGCAACAACAATATGTGTGGCTTGTTAAGTAACAGGAGAGCTTCAAATAAAGCAATTTTGCCTGTCTCATCCTCACTTATGAATGACGATGTTGAAGCAAATCTAGCAAACATATCTGCAGGGTTTCAATCTTTGCCTCAACAGTCAATTAATGGTATTACGAATGTTGATAATCATGATCAGAATAACACTGTCACCTCAGCGAATCAGCGGGAAACTGACCAAACGAATAATCTTAATGAACTTTTCTTAATGCTCAACGACATAGTTCTTCCGGATGAGACTGCAGAGAGCCCTCATGCTGGTGAACGTTCAAGTTCTGACATTCTTAGCTCCTTTAATGTTGAACACTACATTCAGATGTTGCTGGGAGATGGTGATCATGTGAACGCTCAAACAAGTGAAGGAAGCACCAATGTTCTGCCAAACAAGTCCTCATCTTGCACCAACCAAAACCCTAAGATGGAGACGCTGAATGACGCATCCACAAACTTGGAGCCACTGAACATGTTGGTGGCGGAAAAGGCTAATTTACCATCAGGAAACTCCATTCCTCAGGAGCAGGATTGGGACATGGATATCCTTGAAAATTTATTTGGTGCTACAGATCCCAGCAAGAAGTAA 1926 0.4117 MASNSPQVVDCERLDITVLLVDNDTTALSVNAGFLRSWQYKVATATSGHEALKTLREFRGFFDLVIADLNIREMNGFELQKRVKREFNLPVIIMSGDGRNLKHGASYCIMKPVQRDDLKNVWQYVVAGKREKLRIVNGRIVSVSEEEEEEEEEEDSPPPRTVNPASPKKQRKKYCKRKSSELIENEELIFCGPKRSRIFWTTNLHNRFLLAIDYIGMEKAVPRKILEIMNVPGLTRENVSSHLQKYRMFLKKIAEKGILDGLSEKALRSKFAIGLPTDLIRDLQKRVNNHFRHQENDYHQPYSTVVSRPPTTKPLLTNQTRLVQPNHYRTNHIYRNFQQSHHHDQANHHLHRPIVNGGVFMTSANALIANGLMSNYSSSGNNRNLPCGSFGLQRSPSPYNNHYGTQLNNNASLTFGALNRVQNVGNTGHSNNNRSNNNMCGLLSNRRASNKAILPVSSSLMNDDVEANLANISAGFQSLPQQSINGITNVDNHDQNNTVTSANQRETDQTNNLNELFLMLNDIVLPDETAESPHAGERSSSDILSSFNVEHYIQMLLGDGDHVNAQTSEGSTNVLPNKSSSCTNQNPKMETLNDASTNLEPLNMLVAEKANLPSGNSIPQEQDWDMDILENLFGATDPSKK 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0342 641 CDD REC_typeB_ARR-like 18 126 - -
Acco01g0342 641 MobiDBLite consensus disorder prediction 565 587 - -
Acco01g0342 641 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 381 IPR045279 GO:0009736
Acco01g0342 641 FunFam Two-component response regulator 192 254 - -
Acco01g0342 641 MobiDBLite consensus disorder prediction 144 176 - -
Acco01g0342 641 SMART REC_2 16 122 IPR001789 GO:0000160
Acco01g0342 641 Gene3D - 16 178 - -
Acco01g0342 641 Gene3D - 193 254 - -
Acco01g0342 641 ProSiteProfiles Response regulatory domain profile. 17 126 IPR001789 GO:0000160
Acco01g0342 641 NCBIfam myb-like DNA-binding domain, SHAQKYF class 196 248 IPR006447 GO:0003677
Acco01g0342 641 Pfam Response regulator receiver domain 18 120 IPR001789 GO:0000160
Acco01g0342 641 SUPERFAMILY Homeodomain-like 193 252 IPR009057 -
Acco01g0342 641 SUPERFAMILY CheY-like 16 131 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0342 Acco-ChrAcco01 4136445 4141940 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0342 14 271 Response Regulator Gene Family AT5G07210 35.959 6.19e-45 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco01g0342 Response_reg 1.1e-17 CL0304