Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0335 ATGTATTCAAGCGAGCTTCACCTCCCAGTTGACATTCAGTCTGAAGAGTTGGATCCTGATGTGCGGCATATTGTTGAGGACTTGTGGGGCGTTCAAGAGATGTCTTTAGGAAAAAAATCACATTTGCCTTCCATTTTCCATGCCTTTTGCCCTGCCTTCAATTTATCAGACATGTTTGAAGACCTACACTTTTGGATTCTTGTTCTTGACATCAATTTGTTCATTACTCAAGGGTTTGCCTTCATCTACATGGAAGATGAGAGAGATGCTGAGGCTGCAATTCGTGCACTTGATCGGGTAGAATTTGGTCGATCGGGACGCAGACTTCGTGTGGAATGGACAAAAAATGAACGCGGTGGCATTAGAAGGCCTGGTAGTTCAAGAAGATCTTCAGCAAATTCGAGGCCATCAAAGACTTTATTTGTTATTAATTTTGATACAAATCATACCAGGACTAGGGATTTGGAGAGACACTTTGAGCCATATGGCAAGATCATTAATGTGAGGATTAAAAGGAATTTTGCATTTGTCCAGTATGACTCATATGATGATGCCATCAAAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTCATCACAGTTGAATTTGCTGCGGAGAATGATGATGACAGGAGGAATGCACACAGTCCTGATAGAAGCCATGATCGTCCACGCGATATAAGCTATGATAGAAGGCGATCACCTAGTCCTTATCACCGAGAAAGAGGCAGCCCTGACTATGGTCGTGGCTCTAGCCCATATAGGAGAGAGAGGAGCAGCCCTGACTATGGTCACGACCGTAGTCAGAGTTCCCGACAGATTGAGAGAGGTAGCCCTGATTATAATCGCAGAGGTAGCCCCAATTGTAATCGCAGGAGCCGTAGTCCATATAGAAGAGATAGGGGTGGTTCTGATCCAGTTCATGGTTCTAGCCATAGTCCTGATCATAAAGAACAAGCTAGAACTGACCGTGGCAATTCTCACTCCCATAGTCCTGATGAAGGAGAGAGGATAAGCCCTCAAAATGGTGGTTCTGACAACAGCCCTTCCTATAGGAAGAGGGTTAGCCCTGAAAATGGTCATGGCTCTACAAGTAGTCCTGATGCTAGAGGTGAGTATAGTCCTTCCAATGGTGATGAAGATCGTGTAATTTCCGCGCCTGAGCCAAAGGACAATGCTGAACATGGTGCTGCTGCTGAAAGTCCCATGAATGAAACAGACCGCAGCCAATCTCCTGCTGCTGAAGAATGA 1260 0.4508 MYSSELHLPVDIQSEELDPDVRHIVEDLWGVQEMSLGKKSHLPSIFHAFCPAFNLSDMFEDLHFWILVLDINLFITQGFAFIYMEDERDAEAAIRALDRVEFGRSGRRLRVEWTKNERGGIRRPGSSRRSSANSRPSKTLFVINFDTNHTRTRDLERHFEPYGKIINVRIKRNFAFVQYDSYDDAIKALEATNMSKLLDRVITVEFAAENDDDRRNAHSPDRSHDRPRDISYDRRRSPSPYHRERGSPDYGRGSSPYRRERSSPDYGHDRSQSSRQIERGSPDYNRRGSPNCNRRSRSPYRRDRGGSDPVHGSSHSPDHKEQARTDRGNSHSHSPDEGERISPQNGGSDNSPSYRKRVSPENGHGSTSSPDARGEYSPSNGDEDRVISAPEPKDNAEHGAAAESPMNETDRSQSPAAEE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0335 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 209 IPR000504 GO:0003723
Acco01g0335 419 MobiDBLite consensus disorder prediction 212 419 - -
Acco01g0335 419 MobiDBLite consensus disorder prediction 339 375 - -
Acco01g0335 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 103 IPR000504 GO:0003723
Acco01g0335 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 202 IPR000504 GO:0003723
Acco01g0335 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 116 IPR000504 GO:0003723
Acco01g0335 419 SUPERFAMILY RNA-binding domain, RBD 68 213 IPR035979 GO:0003676
Acco01g0335 419 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 70 153 - -
Acco01g0335 419 Gene3D - 67 129 IPR012677 -
Acco01g0335 419 Gene3D - 130 223 IPR012677 -
Acco01g0335 419 MobiDBLite consensus disorder prediction 212 282 - -
Acco01g0335 419 MobiDBLite consensus disorder prediction 296 338 - -
Acco01g0335 419 SMART rrm1_1 139 205 IPR000504 GO:0003723
Acco01g0335 419 SMART rrm1_1 44 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0335 Acco-ChrAcco01 4026785 4029010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0335 76 230 Eukaryotic Initiation Factors Gene Family AT3G16380 23.602 6.06e-06 46.6