Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0328 ATGCTTTCATTCACGTGGTCTTCATCAGACTCTCGTTCGCCGGCTTCGGATTGTGGCAGCGGCAGCGGAAGCAGAGTTCGATCATTGGTTTTGTCCGACGAGGAGGTGTTGTTGGCGGCAAGTCACCCGAAGAAACGCGCCGGGAGGAAGAAGTTCCGGGAGACTCGCCACTCGGTGTACCGCGGTATTCGGAGGAGGAACTCCGGAAAGTGGGTGTGTGAAGTGCGGGAGCCCAATAAGAAGACTAGAATTTGGCTGGGTACATTTCCCACGGCGGATATGGCTGCAAGGGCCCACGACGTGGCGGCGATAGCACTGCGGGGCCGGTCTGCTTGTCTTAACTTTGCTGACTCTTCTTGGAGGTTGCCGGTGCCGGCGTCGACTGAGGCGAAGGATATTCAGAAGGCAGCGGCAGAAGCAGCAGAGGCATTCCGTCCGGGGGCGGAATCGGAGAGAGACGAATTGAGGCAGGAAAATGCAAAGGCAACGACTAGCTCAGCAGCGGCAGCCGGGGAGGAGCAAAGTATATTCTTAATTGATGAAGAAGCGGTGCCGGGGATGCCGGAGATGCTGAGGAACATGGCGGACGCTGTGCTGATGTCGCCTACTCATAAAAGCTTTGGGGATCAGTATGATAGTGTTGACATGGAGGTGGATGATGCTGAGGTGTCATTATGGAGTTATTCAATTTAA 693 0.5527 MLSFTWSSSDSRSPASDCGSGSGSRVRSLVLSDEEVLLAASHPKKRAGRKKFRETRHSVYRGIRRRNSGKWVCEVREPNKKTRIWLGTFPTADMAARAHDVAAIALRGRSACLNFADSSWRLPVPASTEAKDIQKAAAEAAEAFRPGAESERDELRQENAKATTSSAAAAGEEQSIFLIDEEAVPGMPEMLRNMADAVLMSPTHKSFGDQYDSVDMEVDDAEVSLWSYSI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0328 230 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Acco01g0328 230 FunFam Ethylene-responsive transcription factor 2 58 117 - -
Acco01g0328 230 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Acco01g0328 230 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Acco01g0328 230 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Acco01g0328 230 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
Acco01g0328 230 MobiDBLite consensus disorder prediction 145 159 - -
Acco01g0328 230 SUPERFAMILY DNA-binding domain 58 118 IPR016177 GO:0003677
Acco01g0328 230 CDD AP2 58 118 IPR001471 GO:0003700|GO:0006355
Acco01g0328 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 228 IPR045277 GO:0003700
Acco01g0328 230 MobiDBLite consensus disorder prediction 1 25 - -
Acco01g0328 230 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Acco01g0328 230 MobiDBLite consensus disorder prediction 144 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0328 Acco-ChrAcco01 3918498 3919190 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0328 7 228 AP2-EREBP Transcription Factor Family AT5G51990 53.070 3.59e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco01g0328 AP2 9.2e-14 CL0081