Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0323 ATGTTTTCATTCACGGGTTCTTCATCAGACCCTCATTCGTCGGCTTCGGATTGTGGCAGCGGCAGCGGAGTTCAATCATTGGTTTTGTCCAACGAGGAGGTGTTGTTGGCAGCGAGTCACCCGAAGAAACGCGCCGGGAGGAAGAAGTTCCAGGAGACTCGCCACCCGGTGTACCGCGGTATTCGGAGGAGGAACTCCGGCCAGTGGGTGTGTGAAGTGCGGGAGCCCAATAAGAAGACAAGAATTTGGCTGGGTACGTTTCCCACGGTGGATATGGTTGCAAGGGCCCACGACGCGGCGGCGATAGCGCTGCGGGGCCGGTCAGCTTGTCTTAACTTTGCTGACTCTTCCTGGCGTTTATCGATGCCGGCGTCGACTGAGGCGAAGGATATTCAGAAGGCCGCGGCAGAAGCAGGGGAGGCATTCCGTCCGGGGACAGAATCGGAGAGAGACGAATTGAGGCTGGAAAATGCGGAGGCGATGACCAGCTTCATAGTGGTGGCCCGGGAGGAGCAAAGTATATTCTTAACTGATGAAGAAGCGGTGCCAGGTATGCCGGAGTTGCTGAGGAACACGGCGGACGCTGTGCTGATGTCGCCTACTCATAATAGCTTCGAGGATATGTATGATGGAGCTGACGTGGTAGTGGATCATGTTGAGGTGTCATTATGGAGTTATTCATTTTAA 687 0.5488 MFSFTGSSSDPHSSASDCGSGSGVQSLVLSNEEVLLAASHPKKRAGRKKFQETRHPVYRGIRRRNSGQWVCEVREPNKKTRIWLGTFPTVDMVARAHDAAAIALRGRSACLNFADSSWRLSMPASTEAKDIQKAAAEAGEAFRPGTESERDELRLENAEAMTSFIVVAREEQSIFLTDEEAVPGMPELLRNTADAVLMSPTHNSFEDMYDGADVVVDHVEVSLWSYSF 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0323 228 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Acco01g0323 228 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Acco01g0323 228 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Acco01g0323 228 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Acco01g0323 228 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 226 IPR045277 GO:0003700
Acco01g0323 228 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Acco01g0323 228 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Acco01g0323 228 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Acco01g0323 228 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Acco01g0323 228 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0323 Acco-ChrAcco01 3899411 3900097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0323 36 226 AP2-EREBP Transcription Factor Family AT5G51990 55.721 1.63e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco01g0323 AP2 1e-11 CL0081