LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g0320	ATGTATTTGGGTTTGTTTGAGGGTCGAAACAGTGGTATGGATCTTTCTAAGAGCAGCAGTGGTTCTGAACCTTCAACTTCTTACAGTTGTTTCAAAGTAGCAAATCTAAGTGAAACAATATTGGACACAAAGGAGTCTGCAAATTTGAAAGATCGTTATGCTCTTGGCGAGCAGTTAGGTTGGGGGCAGTTTGGTGTTATCAGGGCGTGCACGGACAAGTTGACCGGAGAGGTTTTAGCCTGTAAGTCAATTGCGAAAGATAGGTTGGTAACATTAGATGATCTGCGAAGTGTCAAACTTGAGATTGAGATAATGGCTAGGCTATCTGGCCACCCAAATGTTGTAGATCTCAAGGCTGTTTATGAAGAGGAGGACTTTGTACATCTGGTGATGGAGCTTTGTGCCGGCGGTGAGCTATTTCACCGGCTAGAGAAGCATGGACGGTTTTCTGAATCTGAAGCCCGGGTTCTCTTTAGGCACCTGATGCAAGTGCTTTTGTATTGTCATGAAAACGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTATTAGCAACAAGATCCTCCTCATCTCCAATTAAATTGGCGGATTTTGGACTTGCAACTTACATCAAGCCTGGACAAAGTTTGCATGGGTTGGTAGGGAGTCCATTCTATATAGCTCCAGAGGTACTTGCAGGTTCTTATAATCAGGCTGCTGATGTTTGGAGTGCAGGTGTCATTCTTTACATTTTACTTAGTGGGATGCCTCCGTTTTGGGGTAAGACTAAGTCACGGATCTTTGAAGCCGTTAAAGCGGCTGACTTGAGGTTCCCATCTGAACCTTGGGATCGCATTTCTAAATCAGCGAAGGATTTGATTAAGGGAATGCTCTGTACAGAACCTTCTCAAAGGCTCACTGCTCAGCAGGTCTTAGATCATTGCTGGATGGAGAGCCATCAAACAAATCCTGAACAACTAATTGAATGTGACATCAAAAGTTGTGGTGAATGGGATGTTGGTGATAGCTCATTCTCTTTGTCCTTTATGCCCAGGAATCAGGACATCAGCTTTGGCGCCGAATCTCCTGCATGTGATGCTCAGTCTCCAACTTTCACATGCAGATCATCATTTTCTTCATTTCTGGCGGAACCGTTAACTCCCTGTTCAGCTTTGGGTGGTTTTTCATTTAAGAGTCTCGGTGATTCTGCTGGTTTGGACTTCTCTACTCCTGTTTCTTCAATGCCTAGCTTTGCATTTCTCGGCCCCAATTCTGTTGTTGAGAAAAGGAGTTGTACATTAGATTTCTCAACCAATGAATCTGTGAAGACAATTGCTGAAGAATCAAGCTTGGGAAAACTACTTCTATCACCAGATTCTGCTCTTTGTTGTGGACCAGATATTAAAGTGAGTAACCGTAAGCCAATGGAGACTAAAAGGTCTGGCGGGACCAATGGTCATAGGGTTTTAGGAATCCACAGCAAGAGAAACCGAACAATTGGGCTTGGCGAACGTGAGCAACTTGACGTTGTGGTGACCGAATCTGTCATTCGATGGTCATCGTGCACGCAACTCCCAACATCTCTTAGGTCATCTCTTGTCTGTTGA	1590	0.4415	MYLGLFEGRNSGMDLSKSSSGSEPSTSYSCFKVANLSETILDTKESANLKDRYALGEQLGWGQFGVIRACTDKLTGEVLACKSIAKDRLVTLDDLRSVKLEIEIMARLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHRLEKHGRFSESEARVLFRHLMQVLLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGSYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWDRISKSAKDLIKGMLCTEPSQRLTAQQVLDHCWMESHQTNPEQLIECDIKSCGEWDVGDSSFSLSFMPRNQDISFGAESPACDAQSPTFTCRSSFSSFLAEPLTPCSALGGFSFKSLGDSAGLDFSTPVSSMPSFAFLGPNSVVEKRSCTLDFSTNESVKTIAEESSLGKLLLSPDSALCCGPDIKVSNRKPMETKRSGGTNGHRVLGIHSKRNRTIGLGEREQLDVVVTESVIRWSSCTQLPTSLRSSLVC	529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g0320	529	PANTHER	SERINE/THREONINE-PROTEIN KINASE	42	324	-	-
	Acco01g0320	529	CDD	STKc_CAMK	52	310	-	-
	Acco01g0320	529	Pfam	Protein kinase domain	53	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0320	529	FunFam	Calcium-dependent protein kinase 1	55	138	-	-
	Acco01g0320	529	FunFam	Phosphoenolpyruvate carboxylase kinase	140	327	-	-
	Acco01g0320	529	Gene3D	Transferase(Phosphotransferase) domain 1	140	329	-	-
	Acco01g0320	529	SMART	serkin_6	53	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0320	529	ProSitePatterns	Protein kinases ATP-binding region signature.	59	86	IPR017441	GO:0005524
	Acco01g0320	529	SUPERFAMILY	Protein kinase-like (PK-like)	51	381	IPR011009	-
	Acco01g0320	529	ProSiteProfiles	Protein kinase domain profile.	53	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0320	529	Gene3D	Phosphorylase Kinase; domain 1	55	139	-	-
	Acco01g0320	529	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	173	185	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g0320	Acco-ChrAcco01	3841528	3844051	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g0320	36	318	EF-hand Containing Proteins	AT3G57530	48.410	9.84e-98	301

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Acco01g0320		Pkinase	1.3e-72	CL0016