Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0314 ATGGTGAGGTCGAAGATTGAAATGAAGAAGATTGAGAATGCAACAAGCCGTCAAGTAACGTTTTCAAAGCGTAAAAGTGGGCTTCTAAAGAAAGCTTACGAGCTATCAGTTCTTTGTGATGCCCAAGTAGCCGTGATTATCTTCTCACAAAGAGGCAGACTGTATGAGTTCTCAAGTTCTGACATCAGCAAGATTTTAGAAAGGTACTGTAAATACAGCAAAGGCGACCGACTGGGCATTTCCTCTGAAGAAGAACAATACAGCCAGCAAATGAAGGTTGAAAGTGCAGTGATGGCCAAGAAGATAGAGCATCTTCTACTTTCTCAAAGGAAACTAATGGGAGAAGAGTTGAATTCATGCTCAATTGAAGAACTCCAAGAAATAGAGAATCAGCTCATCACTAGTTTGCAACATGTCAGGCTTAGAAAGAGTCAGCTATTCCGACATCAAATTCAGCAACTTCAAGACAAGTGTGGAAGAACAGTACAATGGCAGAATCCGTGGATTAAGCACAAAGAAGCGGAGGTAGAAACAGAACTACGTATCGGACTTCCACAAAATCAATGTTCATAG 573 0.4101 MVRSKIEMKKIENATSRQVTFSKRKSGLLKKAYELSVLCDAQVAVIIFSQRGRLYEFSSSDISKILERYCKYSKGDRLGISSEEEQYSQQMKVESAVMAKKIEHLLLSQRKLMGEELNSCSIEELQEIENQLITSLQHVRLRKSQLFRHQIQQLQDKCGRTVQWQNPWIKHKEAEVETELRIGLPQNQCS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0314 190 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco01g0314 190 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco01g0314 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco01g0314 190 FunFam MADS-box transcription factor MADS-MC 13 97 - -
Acco01g0314 190 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Acco01g0314 190 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Acco01g0314 190 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco01g0314 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco01g0314 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco01g0314 190 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco01g0314 190 SUPERFAMILY SRF-like 3 90 IPR036879 GO:0003677|GO:0046983
Acco01g0314 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Acco01g0314 190 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco01g0314 190 Pfam K-box region 83 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0314 Acco-ChrAcco01 3753219 3761502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0314 1 157 MADS-box Gene Family AT2G45660 57.325 8.92e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco01g0314 K-box 2.6e-19 No_clan