Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0313 ATGGTGAGGTCGAAGATTGAAATGAAGAAGATTGAGAATGCAACAAGCCGTCAAGTAACGTTTTCAAAGCGTAAAAGTGGGCTTCTAAAGAAAGCTTACGAGCTATCAGTTCTTTGTGACGCCCAAGTAGCCGTGATTATCTTCTCACAAAGAGGCAGACTGTATGAGTTCTCAAGTTCTGACATCAGCAAGATTTTTGAAAGGTACTGGAAATACAGCAAAGGAGATCGACTGGGCATTCACTATGAAGAAGAACAATACAGCCAGCAAATGAAGGTTCAAAGTGTAGTGATGGCCAAGAAGATAGAGCATCTTCAACTTTCTCGAAGGAAACTAATGGGAGAAGAGTTGAGTTCATGTTCAATTGAAGAACTCCAAGAAATAGAGAATCAGCTCATCACTAGTTTGCAACATGTCAAGCTTAGAAAGGTAACAAAACCAGCTTGCTTCTTTTAA 456 0.3991 MVRSKIEMKKIENATSRQVTFSKRKSGLLKKAYELSVLCDAQVAVIIFSQRGRLYEFSSSDISKIFERYWKYSKGDRLGIHYEEEQYSQQMKVQSVVMAKKIEHLQLSRRKLMGEELSSCSIEELQEIENQLITSLQHVKLRKVTKPACFF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0313 151 ProSiteProfiles K-box domain profile. 88 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco01g0313 151 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco01g0313 151 Pfam K-box region 84 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco01g0313 151 SUPERFAMILY SRF-like 3 90 IPR036879 GO:0003677|GO:0046983
Acco01g0313 151 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Acco01g0313 151 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Acco01g0313 151 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 141 - -
Acco01g0313 151 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco01g0313 151 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Acco01g0313 151 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco01g0313 151 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco01g0313 151 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco01g0313 151 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco01g0313 151 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0313 Acco-ChrAcco01 3742491 3749591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0313 1 144 MADS-box Gene Family AT5G62165 63.889 1.49e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco01g0313 K-box 1.3e-13 No_clan