Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0305 ATGAGCAGAGGGAAGAAGCATATTCCACTGCCTTCTTCAGACAATAATGATGATGAAAAGAAGATCATTCGTAGGGAAACTGAAAGGAAAAGAAGGCAACAAATGACCACCCTCTGTGAATCACTCCGATCTTTGCTTCCTTTTGAGCTCATCAAGGGAAAGCGTTCAGTTTCAGACCACATAGGGGAGGCTGCAAGTTATATAAAAGATTTGGAGGAGAAAAACCAAGAACTCCAAATTATGAGAGATAAGCTCAAACAAGAAGCTAATCAAAGTTTGTTTGGTGAAAGTTCAAGCCATTCAAATATGGTTAAGTTTGTAAGCATTTCTCCTTTTCTGGGTGGCATTATGGAAATTTCTGTAGATAGTGGCCTTGAGGAAAGCAGTTTTCCACTATCACTCTTGCTGGAAATATTGATGCAAGAAGGATGTAAAGTTGTGAGTTGTGTGTCCACCCAAGTGAACGGAAGGCTATACCACTCTATTAAGGCTGAGGTGAATAACTTGGAAAGTCTTGATATAGCTGGGTTGGAACAGAAACTGAATGGTGCAATCTTCTGGTCAATCAAGGATTTGCTTTGA 582 0.4003 MSRGKKHIPLPSSDNNDDEKKIIRRETERKRRQQMTTLCESLRSLLPFELIKGKRSVSDHIGEAASYIKDLEEKNQELQIMRDKLKQEANQSLFGESSSHSNMVKFVSISPFLGGIMEISVDSGLEESSFPLSLLLEILMQEGCKVVSCVSTQVNGRLYHSIKAEVNNLESLDIAGLEQKLNGAIFWSIKDLL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0305 193 Gene3D - 11 98 IPR036638 GO:0046983
Acco01g0305 193 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 15 181 - -
Acco01g0305 193 Coils Coil 64 91 - -
Acco01g0305 193 Pfam Helix-loop-helix DNA-binding domain 24 72 IPR011598 GO:0046983
Acco01g0305 193 MobiDBLite consensus disorder prediction 1 22 - -
Acco01g0305 193 SMART finulus 25 77 IPR011598 GO:0046983
Acco01g0305 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 19 71 IPR011598 GO:0046983
Acco01g0305 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 94 IPR036638 GO:0046983
Acco01g0305 193 CDD bHLH_AtORG2_like 20 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0305 Acco-ChrAcco01 3591709 3592578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0305 13 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 37.569 1.83e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g0305 HLH 3.2e-07 No_clan