Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0302 ATGATGAACCCATTGCCTCCATTTGGCGATGAAGATTTGTTCTTCCAAATTTCAGTTCTGAATAGTCGTTCTTCTCTCTCGATCCAAACAATCCCAGAACATGAGATCTTTCACGATCCCGCAGGAAGAGTGAATAATTTTGGAAGTGAAGAAGTAATATCAAAGGGAAAGGGCAAGAAAAAGAAGCAAAATGAATTTCCAGCTAAAATTGCTGAAGATGGTAACAAGAAATGGATTCATAGAGAGACAGAAAGACAAAGAAGACAAGAAATGGCCACTCTTTGCGCCTCCCTCAGATCATCTTTGCCTCTCGAATACATCAGGGGAAAGCGATCAGCTTCAGATCACATCGATGGGGCTGTGAAATATATCAAAAACCTAAGCAACAAAGTGAAGCAATTGAAGGAAAAGAGAGATGAGTTGATGAAAAATGGACATAGAATCTCTGTTATTGTTCATCCTTACAAGGTTGGAGTTGAGATTATGTGCAGTTATAGTTTCAGAGAGTACTTATTTACTCAGTCAAAACTCTTGAGTATTTTGATTAAAGAAGGTTTTAACGTGGTGAGCTGCACTTCTATCAATAGGGATGAGATGTTCATTCACACAATTCGATTAGAGGAGTCTGATATCTATGGGAGTACTACTACAACTGACTACTCTGAACTGCAAAGAAAGATTACTGCAGAAATATTATCTACAGAACATAGGTAA 714 0.3796 MMNPLPPFGDEDLFFQISVLNSRSSLSIQTIPEHEIFHDPAGRVNNFGSEEVISKGKGKKKKQNEFPAKIAEDGNKKWIHRETERQRRQEMATLCASLRSSLPLEYIRGKRSASDHIDGAVKYIKNLSNKVKQLKEKRDELMKNGHRISVIVHPYKVGVEIMCSYSFREYLFTQSKLLSILIKEGFNVVSCTSINRDEMFIHTIRLEESDIYGSTTTTDYSELQRKITAEILSTEHR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0302 237 CDD bHLH_AtORG2_like 76 143 - -
Acco01g0302 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 154 IPR036638 GO:0046983
Acco01g0302 237 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 64 226 - -
Acco01g0302 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 127 IPR011598 GO:0046983
Acco01g0302 237 Gene3D - 68 153 IPR036638 GO:0046983
Acco01g0302 237 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983
Acco01g0302 237 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0302 Acco-ChrAcco01 3480387 3481465 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0302 80 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 37.288 2.60e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g0302 HLH 2.6e-07 No_clan