Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0208 ATGGCCTCCGATCTCGAAGCCAGAGCCAAAGAGGCTTTCGTCGATGACCACTACGAGCTGGCCGTAGACCTCCTCACTCAGGCCATCGCCATCAGCCCTAGCGCTGACCTCTATACCGACCGCGCCCAGGCTAACATCAAACTGGGCAACTTCACTGAAGCTGTTGTTGACGCGAACAAGGCAATTGACTTGAATCCTGAACTAGCCAAGGCATATTTGCGCAAAGGTACCGCGTGCATGAAGCTTGAGGAATATCAGACTGCTAAGACAGCTCTGGTGAAGGGTGCTTCATTGGATCAAGGAGATCAAAGATTCATTACTTTGATCAAAGAGTGTGATGAACTTATTGCAGAGGAAAGCAAAACCATAACTATACATGAAAAGAGCCCCATCTCTGATGATGCTTCAAAAGATATTAAGGTAGAGGACGACCTTGCCTTAAATCCAGAGAATGACCTACCTCTGGTGGCTGAACCTGCAGCTAAGCCTAAGTACAGGCATGAATTCTACCAGAAGCCTGATGAAGTTGTTGTAACCATATTTGCGAAGGGAATCCCACGGGATAGAGTTACGGTTGACTTTGGTGAACAAATACTAAGTGTTCGTATTGATGTTCCTGGTGAAGATGAATATAACTTTCAACCCCGCTTATTTGGAAAGATAATACCTGCAAGAAGCAGATATGAGGTACTGGCTAGCAAAATTGAAATTCGCCTTGCAAAAGCAGAACCTTTACATTGGACTTCTCTTGAGTACACTGGGCAAATTGTAGTTCAAAGAAAGGTTCCTGCTTCCTCAGGTCAAAGGCTTACGTACCCATCCTCAAAACCAACAAGAGTAGATTGGGATAAACTTGAAGCTCAGGTTAAGAAAGAGGAGAAAGAAGAAAAACTTGATGGGGATGCAGCGCTGAACAAGTTTTTCCGTGACATATATCAAGATGCAGATGAGGACACAAGAAGAGCAATGAGAAAGTCATTTGTGGAATCTAATGGAACGGTGCTGTCTACAAACTGGAAGGAAGTGGGATCAAAGAAGGTTGAGGGAAGTCCTCCTGATGGCATGGAGCTGAAAAAGTGGGAATTTTAA 1089 0.4463 MASDLEARAKEAFVDDHYELAVDLLTQAIAISPSADLYTDRAQANIKLGNFTEAVVDANKAIDLNPELAKAYLRKGTACMKLEEYQTAKTALVKGASLDQGDQRFITLIKECDELIAEESKTITIHEKSPISDDASKDIKVEDDLALNPENDLPLVAEPAAKPKYRHEFYQKPDEVVVTIFAKGIPRDRVTVDFGEQILSVRIDVPGEDEYNFQPRLFGKIIPARSRYEVLASKIEIRLAKAEPLHWTSLEYTGQIVVQRKVPASSGQRLTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFRDIYQDADEDTRRAMRKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0208 362 SMART tpr_5 35 68 IPR019734 GO:0005515
Acco01g0208 362 SMART tpr_5 69 102 IPR019734 GO:0005515
Acco01g0208 362 Pfam SGS domain 281 360 IPR007699 -
Acco01g0208 362 SUPERFAMILY TPR-like 4 112 IPR011990 GO:0005515
Acco01g0208 362 ProSiteProfiles TPR repeat profile. 35 68 IPR019734 GO:0005515
Acco01g0208 362 CDD p23_CS_SGT1_like 168 251 - -
Acco01g0208 362 SUPERFAMILY HSP20-like chaperones 162 257 IPR008978 -
Acco01g0208 362 Gene3D - 163 253 IPR008978 -
Acco01g0208 362 PANTHER PROTEIN SGT1 HOMOLOG 1 360 IPR044563 GO:0051087
Acco01g0208 362 Gene3D Tetratricopeptide repeat domain 1 129 IPR011990 GO:0005515
Acco01g0208 362 FunFam Protein SGT1 homolog A 160 263 - -
Acco01g0208 362 ProSiteProfiles SGS domain profile. 271 362 IPR007699 -
Acco01g0208 362 ProSiteProfiles CS domain profile. 162 251 IPR007052 -
Acco01g0208 362 Pfam CS domain 166 241 IPR007052 -
Acco01g0208 362 Pfam Tetratricopeptide repeat 69 100 IPR019734 GO:0005515
Acco01g0208 362 Pfam Tetratricopeptide repeat 35 67 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0208 Acco-ChrAcco01 2370575 2375014 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0208 1 101 U-box Gene Family AT3G07370 31.373 9.49e-06 45.1