Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0206 ATGGGTTCGTTTCATCTTCTCTGCGCAATTCTGGTGTTTGCTTTTGTACGAAAGGTTTCTGGCATTACAGAAGTTGAGGTCCTGAGTGCATTGAAGAAGAACATGAACGATCCTAATGGTGCTCTTCAAAGCTGGGATTCTACCATAGTGAATCCCTGCACCTGGTTTGGTGTTCATTGCGATGGTGGAAATGTCACTCGTATTGATCTTGGAAATGCTGGCGTATTGGGTGAACTAGTTGCAGAGCTTGGTGAGCTCAGAAATTTGCAGCAATTGGAACTTTATGGGAATAATATAAGTGGAAAAATCCCAGAAGAGCTAGGAAACTTGACAAGCTTGGTGAACTTGGATCTGTCCTCGAACAGCCTAGGTGGTCCGATCCCAGACACATTAGGCAAACTTCAGAACTTACGTCTCCTGCGTCTCAATAATAACAACCTATCCGGAAAAATTCCTGTATCTTTTACTGGTCTTAGATTCCTGCGAGTCTTTAATCTCTCGAACAACCAGTTAAGTGGAGACATACCAGTTGGCGGTTCCTTTTCATCATTTTCTACCTCCAGTTTTTTAAATAATCCAGAACTAAGAACACCAAAGGGATCTCCACCACCTCTGACGCCACCATCTCGTTCAGGTAACGGTAATGCTGCTGCAATTGCAGGAGGAGTTGCTGCTGGCACTGCGCTGTTATCTGTAACCTTCATTATTACTGTCCTTATATATTGCAGAAGAAGGAAATCACAACAACATTTTTTTGATGTTGCTGCTGAGGATCCTTCTGTTGCAACTGATCATAATAACCTTGGTCAGCTTAAGACGTTTTCTCTGCTGGAGCTGCTAGTAGCAACAGATAACTTTAGCAGCAGAAACATTCTGGGGGTAGGTGGATTTGGTAGGGTTTATAAAGGACGCTTAACAGATGGTTCTCCTGTGGCCGTGAAGAGACTGAAAGAGGAAAGAGCACATGATGGCGATGGAGAAGTGCAATTTCAAAGAGAAGTGGAAATGATAAGCATGGCTGTGCATCGAAACTTGCTTCGCCTTCTTGGCTTTTGCTCTACACCCACTGAACGCTTGCTTGTTTATCCTCTCATGGTCAATGGTAACATAGCCTCATGCTTACGAGTGGATACAGATTTGAAGGGTATTTGTGAGGAAGAAGAAGTTGAAGACGTAATAAAAGTATGTTTACTGTGCACACAAAGCAACCCATTGAGAAGGCCAAGAATGGCAGAAGTGGTGAGAATGCTGGAAAGTGAGGGTTTGCAACATCAAGAGTGGGAAAAATGGCAGAAAGAGATGTTGCTGAAAGATTATAGCCATCAGACCGATAATAATCATAATGCTGAATGGACTTTAAACTCAACTTCATCTGTAGTAGCAGAAGAACTTTCAGGTCCACGATGA 1407 0.43 MGSFHLLCAILVFAFVRKVSGITEVEVLSALKKNMNDPNGALQSWDSTIVNPCTWFGVHCDGGNVTRIDLGNAGVLGELVAELGELRNLQQLELYGNNISGKIPEELGNLTSLVNLDLSSNSLGGPIPDTLGKLQNLRLLRLNNNNLSGKIPVSFTGLRFLRVFNLSNNQLSGDIPVGGSFSSFSTSSFLNNPELRTPKGSPPPLTPPSRSGNGNAAAIAGGVAAGTALLSVTFIITVLIYCRRRKSQQHFFDVAAEDPSVATDHNNLGQLKTFSLLELLVATDNFSSRNILGVGGFGRVYKGRLTDGSPVAVKRLKEERAHDGDGEVQFQREVEMISMAVHRNLLRLLGFCSTPTERLLVYPLMVNGNIASCLRVDTDLKGICEEEEVEDVIKVCLLCTQSNPLRRPRMAEVVRMLESEGLQHQEWEKWQKEMLLKDYSHQTDNNHNAEWTLNSTSSVVAEELSGPR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0206 468 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Acco01g0206 468 Pfam Protein kinase domain 288 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g0206 468 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 374 - -
Acco01g0206 468 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Acco01g0206 468 SUPERFAMILY L domain-like 23 188 - -
Acco01g0206 468 Gene3D Phosphorylase Kinase; domain 1 256 363 - -
Acco01g0206 468 FunFam Somatic embryogenesis receptor kinase 1 20 205 - -
Acco01g0206 468 SUPERFAMILY Protein kinase-like (PK-like) 265 375 IPR011009 -
Acco01g0206 468 Pfam Leucine Rich Repeat 136 158 IPR001611 GO:0005515
Acco01g0206 468 FunFam Somatic embryogenesis receptor kinase 1 251 364 - -
Acco01g0206 468 Gene3D Ribonuclease Inhibitor 22 201 IPR032675 -
Acco01g0206 468 ProSiteProfiles Protein kinase domain profile. 286 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g0206 468 MobiDBLite consensus disorder prediction 192 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0206 Acco-ChrAcco01 2349960 2354567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0206 376 468 Receptor kinase-like Gene Family AT4G33430 50.526 6.48e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Acco01g0206 Pkinase 7.7e-13 CL0016