Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0172 ATGGATTTCTTTATAGAAGGTGTGGGAGAAAGCTCCTCTCCACCACGCTCCTCCGGCAGTTTCGGCAACTACGATGTGAGGGACGATGTGTACAATCGCTTAGTAGAAAACGGCCACGGCCAAGAGGCTGATTTTCGGGAACAGCTTGACGCTCACTTCAACCGATTGCCTCCAAGTTATTTGTTTGATGTTAACATAGAAAGAGCTGAAGATGTTTTATTACATCAGAAACTTCTCAATTTGGCAAGGGACCCAAGCAAGCGCCCTGTCTACAATATACGCTTTTTGGAGCACATTTCTGCTAGAATAAATGGTCAAGATCAACAAATTGTAAGTGGTCCTTCTAGCGCAAGGCCATCTTCTCCCACATCTAACGGGGAAGCTGCATCATCTCATAAGAGGGCAAGAGATTATGCAGCTGAGTTTGAGCCTTGCTCTAAGCTTGAAGATCTAAATTTGGATGTAGGAAAGAACTCCAAGGAGGTTACTGACAATTACTCCCAGATCCATGAGCAACCGAGTGTTCCAGTTCATGAAGTTATATTTTCTGCCATTGACAAGCCAAAGGTTTTAAGCCAGTTGTCCGCATTGCTGTCTGATATTGGACTTAACATTCGTGAAGCACATGTTTTTTCAACAACGGATGGCTACTCCCTTGATGTATTTGTTGTGGATGGATGGCCAGTCGAGGACACACATGGGTTGTACGAGGCCATGGAGAAAGCGGTAGCAAGAAGTGAGGGGTCCTGGTCTCGTTCTTTAAATTCCCATACGGCTGTGGAGAAGGCCATAAAAGAAGAAGAAAGATCTGGTGATTGGGAAATAGACAGGAGGCTGCTTAGAATGGGAGATAGAATAGCATCTGGATCTTGTGGAGATTTGTATCATGGAGTTTATCTTGGTCAAGATGTTGCTGTTAAGATTTTGCGAAATGAGCATTTGAACGATGCTTTAGAGGATGAATTTGCTCAAGAAGTGGCAATTCTTAGGCAGGTGCATCATAAAAATGTTGTCCGTTTCATTGGTGCATGTACAACTTCTCCACATTTGTGGATTGTAACAGAGTACATGCCCGGAGGAAGTCTGTATGATTACTTGCATAAAAACCATAATATGCTGAATCTCTCTCAACTACTGAAGTTTGCCATGGATGTCTGTAAGGGTATGGAGTATTTGCACAGAAACAATATAATTCATAGGGATCTGAAGACAGCCAATCTGTTGATGGATAACCACAATGTTGTTAAAGTAGCAGATTTTGGAGTGGCTCGGTTCCTGAATCAGGGGGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCTCCAGAGGTTATAAACCATCAACCCTATGACCAGAAAGCTGATGTATTCAGTTTTTCCATAGTACTGTGGGAACTAGTAACTGCAAAGGTTCCATATGATGCCATGACTCCACTACAAGCTGCCCTAGGTGTGAGACAGGGTTTACGCCCAGAACTTCCAAAGCAAGGGCACCCTAAACTGATAGATTTAATGCAAAGATGTTGGGAAGCTATTCCTGCCAACCGGCCATCCTTCCCCGAGATAACAGTTGAACTGGAAAATCTCCTTAAAGAAGTTGAGAATGATTCAGGAACTAACGATGCTTGA 1635 0.4343 MDFFIEGVGESSSPPRSSGSFGNYDVRDDVYNRLVENGHGQEADFREQLDAHFNRLPPSYLFDVNIERAEDVLLHQKLLNLARDPSKRPVYNIRFLEHISARINGQDQQIVSGPSSARPSSPTSNGEAASSHKRARDYAAEFEPCSKLEDLNLDVGKNSKEVTDNYSQIHEQPSVPVHEVIFSAIDKPKVLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEDTHGLYEAMEKAVARSEGSWSRSLNSHTAVEKAIKEEERSGDWEIDRRLLRMGDRIASGSCGDLYHGVYLGQDVAVKILRNEHLNDALEDEFAQEVAILRQVHHKNVVRFIGACTTSPHLWIVTEYMPGGSLYDYLHKNHNMLNLSQLLKFAMDVCKGMEYLHRNNIIHRDLKTANLLMDNHNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDAMTPLQAALGVRQGLRPELPKQGHPKLIDLMQRCWEAIPANRPSFPEITVELENLLKEVENDSGTNDA 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0172 544 SMART serkin_6 280 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g0172 544 FunFam Serine/threonine-protein kinase isoform 1 270 358 - -
Acco01g0172 544 PRINTS Tyrosine kinase catalytic domain signature 354 367 IPR001245 GO:0004672|GO:0006468
Acco01g0172 544 PRINTS Tyrosine kinase catalytic domain signature 499 521 IPR001245 GO:0004672|GO:0006468
Acco01g0172 544 PRINTS Tyrosine kinase catalytic domain signature 437 447 IPR001245 GO:0004672|GO:0006468
Acco01g0172 544 PRINTS Tyrosine kinase catalytic domain signature 456 478 IPR001245 GO:0004672|GO:0006468
Acco01g0172 544 PRINTS Tyrosine kinase catalytic domain signature 391 409 IPR001245 GO:0004672|GO:0006468
Acco01g0172 544 MobiDBLite consensus disorder prediction 107 136 - -
Acco01g0172 544 Pfam Protein tyrosine and serine/threonine kinase 281 527 IPR001245 GO:0004672|GO:0006468
Acco01g0172 544 SUPERFAMILY Protein kinase-like (PK-like) 271 532 IPR011009 -
Acco01g0172 544 MobiDBLite consensus disorder prediction 1 23 - -
Acco01g0172 544 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 133 533 - -
Acco01g0172 544 Gene3D Transferase(Phosphotransferase) domain 1 358 543 - -
Acco01g0172 544 MobiDBLite consensus disorder prediction 107 129 - -
Acco01g0172 544 SUPERFAMILY ACT-like 178 245 IPR045865 -
Acco01g0172 544 Gene3D Phosphorylase Kinase; domain 1 266 357 - -
Acco01g0172 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Acco01g0172 544 ProSiteProfiles ACT domain profile. 179 253 IPR002912 -
Acco01g0172 544 ProSiteProfiles Protein kinase domain profile. 280 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g0172 544 CDD STKc_MAP3K-like 286 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0172 Acco-ChrAcco01 1822852 1833857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0172 25 543 MAP Kinase Kinase Kinase AT4G35780 49.627 3.59e-177 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Acco01g0172 PK_Tyr_Ser-Thr 1.6e-73 CL0016