Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0164 ATGCTGGGGGACTCAACCGCGTTAGGAGGTAGCGGAGCTAGCTCTGGAGATGATGCGGCAGCGGCGGCGGTTGCGGCTGCTGCTGCTGCTGCTGCATCTGCGGGAGGTGGAGTTGCAGAGGCCCATGACGGTGGTGAGTCAGCAGTTGCGGCGGCAGGTAGCGGTGGTGGAGGAGGAGGTGGATCGAATTCAGGCGAAGAGGGTGGTGGCGGTGACAGAAGCTTAGGCGGCAATCGGTGGCCCCGCCAGGAGACTCTGGTGCTCTTGAAGATACGCTCCGATATGGACGTGGCGTTTCGAGATGCCAGCGTTAAAGGTCCCTTGTGGGATGAGGTTTCCAGGAAGCTAGCAGAGCTTGGATATCACAGAAGTGCCAAGAAGTGTAAGGAGAAATTCGAGAACGTTTACAAGTACCACAAGCGAACCAAAGAAGGCCGAACAGGAAAACCATACGGCAAAACTTACCGTTTCTTTGATCAGTTAGAAGCTCTCGATCATCATCATCAAAATACTAATTCTTTATTCATTCAATCCTCTTCTAATTCTGCTCCTCTACCTGCACCACCTGTCTCCGTCATCCCCACCACCCATCCTCCTCTTTCAGTCATGGTGGCGCCGCAAGTAACACCACCACCTCCTCCTCCGCAGCCTCCTCATGTTAATGCTGCTTCTGTTCCATCAGTGAACACTACTACTTCAATCCCTCCATTGTACCCACCAGCATCAACAACGATAACAGGAAACCCTACTTTTATAGCCCCGTTCACGAGCATTCCGACGGATCTATTGTCAAATTCTAGTTCGTCTTCGACATCGTCGGATGAGACGATAGAGGCACGGCGGAGGCGGAAGAGGAAGTGGAAGGACTTCTTCCAGAGGTTGATGAAGGAGGTGATAGAGAAGCAGGAGGAGCTTCAGAAGAGGTTTCTGGAAGCCATAGAGAAACGCGAGCACGAGAGAATGCTTCGAGAGGAAACCTGGAGAATGCAGGAGATGGCCAGGATCAATAAGGAGAGAGAAATATTGGCTCAGGAAAGATCCATTGCCGCCGCCAAAGACGCCGCTGTAATGGCCTTCTTGCAGAAGATCGCTGAACAACAGCAGAATCTCGGCCAACCGACACTGATCACAAACACCATTACCGTCCCCAATCCTCCTCCTCCAACGTCGCAGCCCACTGCAGCTCCAGCTCCAGCCGCACCAGCACCTGCAATTGCACCTCCGCCGCCGCAACCTGTGACGGTGCAACAATCAGCTCCAGTTCTCTCTACTCCTCCACCGCCCGCTCCGCAGCAACAAGGTATGACGAGCATGGAAATTGTGACGAAAAATGACAACGGGGATAGCAGTTATTTGGTGGCGGCGACAACGCCGGGTGCGTCATCGTCGAGGTGGCCGAAAGTGGAGGTAGAGACGCTGATAAAACTACGGACAGACCTTGAAGCCAAGTACCAGGAGAATGTGCCGAAGGGGCCGTTATGGGAGGAAATCTCCGCCGCAATGAGGAGGCTGGGTTACAACCGTAGCTCAAAGAGGTGTAAGGAAAAGTGGGAGAACATAAACAAGTACTTCAAAAAGGTGAAGGAGAGCAACAAGAGAAGACCTGAAGATTCCAAGACGTGTCCGTACTTTCACCAGCTGGATGCTCTATATAGGCAGAAGAGTTTCAAGATGCAGTCAGCGCCGCGGCCGGCGGCGGAGAACATTATGTCTACTCCGCCGCTCATGGTGCGCCCAGAGCAGCAGTGGCCGCCGCAGCCTCAGCCGCAGCAAGATACACGACCGCCGGGGCCGCCCCAGGTGATGATGGGAAGCGGGGGAAATGATGCGATGGAAGAAGACGAAGTAGAGGAAGAAGATGATGACGATGATGATGGAGGAAGCGGTACCTACGAGATAGTGGCAAGCAAGCCAGCTACTTCAGTGGGTGCTTCTGAGTGA 1941 0.5384 MLGDSTALGGSGASSGDDAAAAAVAAAAAAAASAGGGVAEAHDGGESAVAAAGSGGGGGGGSNSGEEGGGGDRSLGGNRWPRQETLVLLKIRSDMDVAFRDASVKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTGKPYGKTYRFFDQLEALDHHHQNTNSLFIQSSSNSAPLPAPPVSVIPTTHPPLSVMVAPQVTPPPPPPQPPHVNAASVPSVNTTTSIPPLYPPASTTITGNPTFIAPFTSIPTDLLSNSSSSSTSSDETIEARRRRKRKWKDFFQRLMKEVIEKQEELQKRFLEAIEKREHERMLREETWRMQEMARINKEREILAQERSIAAAKDAAVMAFLQKIAEQQQNLGQPTLITNTITVPNPPPPTSQPTAAPAPAAPAPAIAPPPPQPVTVQQSAPVLSTPPPPAPQQQGMTSMEIVTKNDNGDSSYLVAATTPGASSSRWPKVEVETLIKLRTDLEAKYQENVPKGPLWEEISAAMRRLGYNRSSKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYRQKSFKMQSAPRPAAENIMSTPPLMVRPEQQWPPQPQPQQDTRPPGPPQVMMGSGGNDAMEEDEVEEEDDDDDDGGSGTYEIVASKPATSVGASE 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0164 646 FunFam Trihelix transcription factor GT-2 465 526 - -
Acco01g0164 646 PANTHER FI21293P1 47 599 - -
Acco01g0164 646 SMART sant 76 138 IPR001005 -
Acco01g0164 646 SMART sant 461 523 IPR001005 -
Acco01g0164 646 MobiDBLite consensus disorder prediction 262 281 - -
Acco01g0164 646 Pfam Myb/SANT-like DNA-binding domain 78 164 IPR044822 -
Acco01g0164 646 Pfam Myb/SANT-like DNA-binding domain 463 550 IPR044822 -
Acco01g0164 646 MobiDBLite consensus disorder prediction 610 628 - -
Acco01g0164 646 MobiDBLite consensus disorder prediction 578 596 - -
Acco01g0164 646 MobiDBLite consensus disorder prediction 378 435 - -
Acco01g0164 646 MobiDBLite consensus disorder prediction 203 228 - -
Acco01g0164 646 CDD GT1 463 528 - -
Acco01g0164 646 Gene3D - 80 141 - -
Acco01g0164 646 Gene3D - 465 526 - -
Acco01g0164 646 MobiDBLite consensus disorder prediction 35 79 - -
Acco01g0164 646 ProSiteProfiles Myb-like domain profile. 72 136 IPR001005 -
Acco01g0164 646 MobiDBLite consensus disorder prediction 572 646 - -
Acco01g0164 646 CDD GT1 78 143 - -
Acco01g0164 646 ProSiteProfiles Myb-like domain profile. 457 521 IPR001005 -
Acco01g0164 646 MobiDBLite consensus disorder prediction 380 432 - -
Acco01g0164 646 MobiDBLite consensus disorder prediction 204 221 - -
Acco01g0164 646 PRINTS Proline rich extensin signature 233 245 - -
Acco01g0164 646 PRINTS Proline rich extensin signature 387 412 - -
Acco01g0164 646 PRINTS Proline rich extensin signature 420 432 - -
Acco01g0164 646 PRINTS Proline rich extensin signature 210 226 - -
Acco01g0164 646 Coils Coil 288 315 - -
Acco01g0164 646 FunFam Trihelix transcription factor GT-2 80 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0164 Acco-ChrAcco01 1655242 1658059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0164 72 583 Trihelix Transcription Factor Family AT1G76880 53.042 9.47e-161 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Acco01g0164 Myb_DNA-bind_4 3.2e-22 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g0164 01 1655242 1658059 Acco01g0164 01 1655242 1658059 ECH