Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0148 ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGTTTTGGAAGCTTATCAAGGCGGAGTGATTTAAGGCTTCAAGGCCATCACAGGGTAAAGTCACATAGTTCAGTCCATGAGGTGCCAGCACAACCTCCGGTGATACAGAACAGCCGGTGGGCTAGCCTTCCACCTGAGCTCCTTCACGATGTCATCAAAAGATTGGAAGAAAGTGAGAGCACATGGCCTGCCCGTAAGCATGTGGTCGCATGCGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAATCCAGAGTTCTGTGGGAAAATTACTTTTCCTGTTTCCTTGAAGCAGCCTGGGCCTCGGGATGGAATGATGCAGTGTTTCATCAAGAGAGACAAATCTAACCTGACATACCACCTCTTTCTTTGCTTAAGTCCTGCCTTGCTTGTTGAGAATGGGAAGTTTCTTCTCTCTGCCAAACGGACTAGGCGAACCACTTGCACTGAGTATATTATATCCATGGATGCTGAAACCATATCAAGATCTAGCAGTGCCTATATTGGGAAACTAAGGTCAAATTTTCTGGGCACCAAATTCCTAATATATGATACACAGCCTCCCCATAATTATGCTCAGTTGCCTCCTCCTCAACCTAGCCAAAGTCGTCGATTCTACCCTAAAAAGGTGTCGCCGAAAGTCCCTAGTGGCAGCTACAACATTGCCCAGGTCACCTATGAGTTGAACGTGCTCGGTACTAGAGGCCCGCGGAAGATGAACTGCACCATGTGCTCAATCCCAGAGTCAGCCCTGGAGCCTGGTGGCGCTGTCCCTGGCCATCCAGAGCTCCTCCCCCGTGCCCTAGAGGACTCATTCCGGAGCACATCCTTTTCAAAATCAATCCACAGTTCATCCCATTTTAGCAGCTCTAGGTTCTCAGACATCATGTGGAGCAGCAACGAAGAAGAGAGTAGTGGCGAGGTAAAAGAGAGGCCTCTGATTCTTAAGAACAAGTCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTCCGGGGCAGAGTGACAGTGGCCTCAGTCAAGAATTTCCAGTTGATCGCAGCAGGGCAGCCTCAGCCTGCTGCCGGTGCTCCAACAACACCAGCACAGCCTGCCCCGGCAGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTGGGCAAGGATATGTTCACCATGGACTATCGATATCCTCTGTCGGCTTTCCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACTAAACTAGCATGTGAATAG 1296 0.4938 MSFRSIVRDVRDGFGSLSRRSDLRLQGHHRVKSHSSVHEVPAQPPVIQNSRWASLPPELLHDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIVSNPEFCGKITFPVSLKQPGPRDGMMQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDAETISRSSSAYIGKLRSNFLGTKFLIYDTQPPHNYAQLPPPQPSQSRRFYPKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMNCTMCSIPESALEPGGAVPGHPELLPRALEDSFRSTSFSKSIHSSSHFSSSRFSDIMWSSNEEESSGEVKERPLILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAGQPQPAAGAPTTPAQPAPADHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0148 431 Gene3D Tubby Protein; Chain A 111 425 IPR025659 -
Acco01g0148 431 SUPERFAMILY Tubby C-terminal domain-like 101 431 IPR025659 -
Acco01g0148 431 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Acco01g0148 431 FunFam Tubby-like F-box protein 109 431 - -
Acco01g0148 431 MobiDBLite consensus disorder prediction 208 228 - -
Acco01g0148 431 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Acco01g0148 431 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Acco01g0148 431 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Acco01g0148 431 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Acco01g0148 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Acco01g0148 431 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Acco01g0148 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Acco01g0148 431 FunFam Tubby-like F-box protein 47 100 - -
Acco01g0148 431 Pfam F-box domain 52 100 IPR001810 GO:0005515
Acco01g0148 431 CDD F-box_AtTLP-like 52 96 - -
Acco01g0148 431 Gene3D - 47 101 - -
Acco01g0148 431 Pfam Tub family 113 426 IPR000007 -
Acco01g0148 431 PANTHER TUBBY-RELATED 28 429 - -
Acco01g0148 431 SUPERFAMILY F-box domain 45 96 IPR036047 GO:0005515
Acco01g0148 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0148 Acco-ChrAcco01 1550050 1552664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0148 1 431 TUB Transcription Factor Family AT1G76900 67.912 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco01g0148 Tub 1.9e-114 CL0395