LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g0125	ATGGGTTGCGTTCAGGCTAAGCCATCGGGGCGTTCATCGGAAGCTAAGAGCTTAGAGAGGCTGAAATTAGAAAATGGGTATGTTGGAAATGAGGATTTCACTGCTCATCGACGATCGATGGGCCAGAGATATGGAGAAATCGAAGAGATTGCTAGGGTAAACCAGCGCGAAATCAGAAAGCATCGGCTTGGGTCTGGTACTGGGAACGAAGAAAGCAGAAATCGCTGGGTTACAGAGGGCAAGAGCAATGCTGTGCATGATGGTGAGAAATTGGCAAGGAAATCTTTTGACGATGAGATGGTTGATGGATGGCCCAGATGGCTAGTTGACAATGTTCCTCGAGAAGTTTTGCCTGGCTTGGTTCCCCGGAGTGCTGATTCATACATAATGGTTGAGAAGGTAGGACAAGGAACCTACAGTAACGTTTATAAAGCACGAGATAGGGCTACTGGAGAACTTGTGACCCTTAAGAAGGTTCGCTTTGATAAATCCCAGCCTGAGAGCATTAAATTTATGGCAAGAGAAATTATGATATTACAGAGATTGGATCATCCTAATTTCATAAAACTTAAAGGATTGGCTACATCAAGAATGCAATATAGTTTTTATCTTGTTTTTGATTTCATGCAATCAGACTTGGCTAGAATAATATCTCGTCCCAAAGAAAGACTCACTGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTGCAGCATTGCCATGATAGGGGCATTTTGCACCGAGATATTAAAGGTTCAAACCTCTTGATTGATAAAAATGGAATGCTTAAGATTGCTGATTTTGGGCTTGCCAATTTTTATAATCCGAACCATAACCAGTATCTCACGAATCGGGTCGTGACACTATGGTACAGAGCTCCTGAGCTTTTGTTAGGTGCGACGAATTATGGAGTGGGTATTGATTTATGGAGTGCTGGATGCCTCTTAGCAGAAATGTTTAAAGGAATTCCAATCATGCCTGGAAGAACAGAGGTTGAGCAACTTCATATAATTTTCAGGCTATGTGGCACGCCATCAGAGGAGTATTGGAGAAAATTGAATCTTTCTACAACATTTAGACCTCCAAAGTCTTACGGACCCAGCCTAGCAGAATCTTTTAGGGATCTCCCTGCATCTTCTGTGGGTCTTTTGTGTACTCTGCTCACATTGGATCCTGCATACCGTGGCACTGCATCTAAAGCCCTTCAAAATAAGTTTTTCTTTATAATCCCATTGGCATGTGAACTCTCTGGCCTACCTGTAATCTATGAGGAAGATGATGGGAAAAATCTTACCAATGGACAGATCAAGCGTGTGAATTCTAAATTAAGACGATCTCATTACCGTCATGAGAATCGAAGGAAGAATCTGGTGTCTGGCCGGCAAACAGAGCATACTGTATCTTCTGAAGAGGAATTGATTAATAAAGTTGAGGCATTTGTTCCTTATAATGAAGAACAGGGCAGCATCCCCAGAAGCAGTAGGACATCTTCTGTTTCTAACACTTTTTTGAAGTTGGGTTAG	1533	0.422	MGCVQAKPSGRSSEAKSLERLKLENGYVGNEDFTAHRRSMGQRYGEIEEIARVNQREIRKHRLGSGTGNEESRNRWVTEGKSNAVHDGEKLARKSFDDEMVDGWPRWLVDNVPREVLPGLVPRSADSYIMVEKVGQGTYSNVYKARDRATGELVTLKKVRFDKSQPESIKFMAREIMILQRLDHPNFIKLKGLATSRMQYSFYLVFDFMQSDLARIISRPKERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLKIADFGLANFYNPNHNQYLTNRVVTLWYRAPELLLGATNYGVGIDLWSAGCLLAEMFKGIPIMPGRTEVEQLHIIFRLCGTPSEEYWRKLNLSTTFRPPKSYGPSLAESFRDLPASSVGLLCTLLTLDPAYRGTASKALQNKFFFIIPLACELSGLPVIYEEDDGKNLTNGQIKRVNSKLRRSHYRHENRRKNLVSGRQTEHTVSSEEELINKVEAFVPYNEEQGSIPRSSRTSSVSNTFLKLG	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g0125	510	MobiDBLite	consensus disorder prediction	490	510	-	-
	Acco01g0125	510	ProSiteProfiles	Protein kinase domain profile.	128	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0125	510	Gene3D	Transferase(Phosphotransferase) domain 1	211	418	-	-
	Acco01g0125	510	Pfam	Protein kinase domain	130	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0125	510	CDD	STKc_CDK9_like	128	410	-	-
	Acco01g0125	510	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	248	260	IPR008271	GO:0004672\|GO:0006468
	Acco01g0125	510	SMART	serkin_6	128	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g0125	510	Gene3D	Phosphorylase Kinase; domain 1	119	210	-	-
	Acco01g0125	510	PANTHER	CELL DIVISION PROTEIN KINASE	126	410	-	-
	Acco01g0125	510	SUPERFAMILY	Protein kinase-like (PK-like)	122	411	IPR011009	-
	Acco01g0125	510	FunFam	Putative serine/threonine-protein kinase	211	448	-	-
	Acco01g0125	510	FunFam	probable serine/threonine-protein kinase At1g54610	115	210	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g0125	Acco-ChrAcco01	1320657	1325837	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g0125	123	445	Core Cell Cycle Gene Families	AT5G10270	44.575	5.99e-93	290

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Acco01g0125		Pkinase	2.1e-65	CL0016