Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0108 ATGGACATGGCGGCGTCGATTTCTGCACCACCGATGGTTCCGCCCAATGGTCCTCCGACACCGGTGCCGGTGTCGCCTGCGGCAGCGGCATTGTCTACGGGACCGTATGCAAATATGTCATTGTACGTCGGTGATCTTCACCCGGATGTGGATGAACGGCGGCTCGTTGATCTGTTCAGCCAAGTGGCGACTGTTGTCTCCGCCAGGATTTGTAGAGATCAGACTAGGCAATGCTCTCTCGGTTACGGCTACGTTAACTTTAGCACCGCCCAGGATGCGGCTAATGCCATAGACATTCTGAATTTTTCTCCAATAAATGGAAGACCCATCCGGATCATGTTCTCTCATAGAGATCCTAGCATTCGGAAAAGTGGATTTGCAAATGTCTTTATTAAGAACTTGGACATATCAATAGATAACAAGGCATTATATGAAACTTTTTCTTCCTTTGGAACTGTACTTTCCTGCAAGGTAGCTGTTGACGCCTTTGGCCAGTCGAAAGGGTACGGTTTTGTACAGTATGATAATGAAGAATCTGCACAAAATGCTATCAAACAATTAAATGGGATGTTGTTAAACGATAAACAAGTCTATGTTGGACTCTTTGTTCGGCGCATGGAAAGAACTCGTGCAAATGGATTGCCAAAGTTTACTAATGTTTATGTGAAAAATTTCTCTGAAACTTATACTGATGAGGACCTCAAACAGCTTTTTGGGTCATATGGCACAATAACTAGTGCAGTTGTCATGAAAGATGCAAATGGCAAGTCTCGATGTTTTGGCTTTGTTAATTTCGAAAGCCCAGAATCAGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACCACTATCAATGGTGACAAGATATTATATGTAGGGAGAGCTCAGAAGAAAGCAGAAAGAGAGGCAGAATTGAAGGCCAAATTTGAGCAAGAAAGAATTAGTCGATATGAGAAATTACAAGGTGCTAACTTGTACATGAAAAATCTCGATGATAGCATCGATGATGAAAAACTGAAGGAGCTGTTTTCTGAGTTTGGAACCATTACATCATGCAAGGTTATGCTTGATTCACAAGGTCACAGTAAGGGTTCTGGTTTTGTGGCTTTTTCTACACCTGAGGATGCAAGTAAAGCTTTGAATGAAATGAATGGGAAAATGGTAGCTGGAAAACCTCTTTATGTTGCTGTGGCCCAGCGGAAAGAAGAGAGGAAGGCCTTGCAGGCTCATTATGCTCAATTCCGTTCACCTGGTAGGATGGGGCCTCTGCCTACTGGAATTCCTGGATATCATCCTGGGGCACCTAGATTTGCCCCCCAGCAGTTGTACTATGGTCAAGGAACACCTGGTCTAATACCACCTCAGCCATCAGGATTTGGTTTCCAGCCGCAACTAATGCCTGGAATGCGTCCCGGTGTTGCTCAAAACTTCGTTATGCCATACCAACTTCAGAGACAAGTTCAGCCTGGGCAAAGGATGGGTGTCCGACGAGGTGGAAACTTCCAACATATGCAGCACAACCAGATGCTGCAACGGAACTCCAATCAAGGATTTAGATATATGGGCAACAATCGAAATGGCATGGACCCATCTATGGTTCAACAAGGCCTGGTGAATCCAATGATGCCTTTACCCTTTGATGGTTCTGGGGTTACTTCACCTCCAGTTGATAATCTGCGACCTGGTTCGCTTTCTACAACGCTTGCCTCAACTTTGGCCTCTGCTTCACCAGAAAATCAGCGCTTGATACTGGGTGAACAATTATATCCCCTGGTAGAGCGTCTTGCGCCAAGCCATAATACAGCAAAAGTGACGGGGATGTTGCTGGAAATGGACCAAGCCGAGGTTATCCATCTCATTGAATCTCCTGAAGACTTGAAAATAAAGGTTTCTGAGGCAATGCAAGTCCTGCATGAAGCTTCATCGGGCACTGAAGTTGGCGAACAGCTTGGCTCACTGAGAAAACCGGTGAGAAGAGGAAAGCCCCTTTTTTATTTTTTATTTTTCGTTTGGGCTCTTCATCTGTTTACTTCTTCTGCGGTCGAGGTCCGATTGGCCATATCGGCGACCACCGAATCCCTCGAGGTACGTCCGGCAAAGGTTGTATGA 2106 0.4544 MDMAASISAPPMVPPNGPPTPVPVSPAAAALSTGPYANMSLYVGDLHPDVDERRLVDLFSQVATVVSARICRDQTRQCSLGYGYVNFSTAQDAANAIDILNFSPINGRPIRIMFSHRDPSIRKSGFANVFIKNLDISIDNKALYETFSSFGTVLSCKVAVDAFGQSKGYGFVQYDNEESAQNAIKQLNGMLLNDKQVYVGLFVRRMERTRANGLPKFTNVYVKNFSETYTDEDLKQLFGSYGTITSAVVMKDANGKSRCFGFVNFESPESAAAAVERLNGTTINGDKILYVGRAQKKAEREAELKAKFEQERISRYEKLQGANLYMKNLDDSIDDEKLKELFSEFGTITSCKVMLDSQGHSKGSGFVAFSTPEDASKALNEMNGKMVAGKPLYVAVAQRKEERKALQAHYAQFRSPGRMGPLPTGIPGYHPGAPRFAPQQLYYGQGTPGLIPPQPSGFGFQPQLMPGMRPGVAQNFVMPYQLQRQVQPGQRMGVRRGGNFQHMQHNQMLQRNSNQGFRYMGNNRNGMDPSMVQQGLVNPMMPLPFDGSGVTSPPVDNLRPGSLSTTLASTLASASPENQRLILGEQLYPLVERLAPSHNTAKVTGMLLEMDQAEVIHLIESPEDLKIKVSEAMQVLHEASSGTEVGEQLGSLRKPVRRGKPLFYFLFFVWALHLFTSSAVEVRLAISATTESLEVRPAKVV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0108 701 Coils Coil 291 319 - -
Acco01g0108 701 Pfam Poly-adenylate binding protein, unique domain 571 636 IPR002004 GO:0003723
Acco01g0108 701 SMART rrm1_1 40 113 IPR000504 GO:0003723
Acco01g0108 701 SMART rrm1_1 128 200 IPR000504 GO:0003723
Acco01g0108 701 SMART rrm1_1 323 395 IPR000504 GO:0003723
Acco01g0108 701 SMART rrm1_1 219 292 IPR000504 GO:0003723
Acco01g0108 701 SUPERFAMILY PABC (PABP) domain 504 639 IPR036053 GO:0003723
Acco01g0108 701 CDD RRM2_I_PABPs 125 200 IPR045305 -
Acco01g0108 701 FunFam Polyadenylate-binding protein 208 304 - -
Acco01g0108 701 MobiDBLite consensus disorder prediction 11 25 - -
Acco01g0108 701 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 40 636 IPR006515 GO:0003723
Acco01g0108 701 SUPERFAMILY RNA-binding domain, RBD 39 204 IPR035979 GO:0003676
Acco01g0108 701 Gene3D - 305 412 IPR012677 -
Acco01g0108 701 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 563 641 IPR002004 GO:0003723
Acco01g0108 701 FunFam Polyadenylate-binding protein 128 201 - -
Acco01g0108 701 SMART rrm2_1 323 395 IPR003954 GO:0003676
Acco01g0108 701 SMART rrm2_1 219 291 IPR003954 GO:0003676
Acco01g0108 701 SMART rrm2_1 128 200 IPR003954 GO:0003676
Acco01g0108 701 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Acco01g0108 701 Gene3D - 29 119 IPR012677 -
Acco01g0108 701 Gene3D - 562 641 - -
Acco01g0108 701 CDD RRM3_I_PABPs 217 297 - -
Acco01g0108 701 SUPERFAMILY RNA-binding domain, RBD 217 403 IPR035979 GO:0003676
Acco01g0108 701 FunFam Polyadenylate-binding protein 560 641 - -
Acco01g0108 701 CDD RRM4_I_PABPs 321 399 - -
Acco01g0108 701 PANTHER RNA BINDING PROTEIN 39 101 - -
Acco01g0108 701 Gene3D - 126 201 IPR012677 -
Acco01g0108 701 MobiDBLite consensus disorder prediction 1 26 - -
Acco01g0108 701 FunFam Polyadenylate-binding protein 305 409 - -
Acco01g0108 701 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 197 IPR000504 GO:0003723
Acco01g0108 701 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 288 IPR000504 GO:0003723
Acco01g0108 701 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
Acco01g0108 701 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 392 IPR000504 GO:0003723
Acco01g0108 701 Gene3D - 203 304 IPR012677 -
Acco01g0108 701 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 204 IPR000504 GO:0003723
Acco01g0108 701 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Acco01g0108 701 SMART poly_2 575 639 IPR002004 GO:0003723
Acco01g0108 701 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 296 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0108 Acco-ChrAcco01 1140410 1146764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0108 36 645 Eukaryotic Initiation Factors Gene Family AT1G71770 59.069 0.0 705