Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0042 ATGTCGTTGAACACGGAGATGGAGCAGAAATCTTCTCCAGCAAAAACCATGTCGGTCTTGCCTTACGAAACCCCGAGGCTCAGAGACCATTACCTTTTGGGGAAGAAGCTAGGGCATGGCCAATGGGGGACCACCTACCTCTGTACGCACAAGGAATCAGGCGAACAATTCGCTTGCAAAACGATTCCGAAGCGGAAGCTCTCGAGCAAGGTCGATTACGATGACGTGTGGAGAGAGATTCAGATCATGCATCATCTGTCGGAGAACCCCCATGTGGTTCGGATACAAGGGGCGTACGAGGACGCCGTGTTTGTGCACCTGGTTATGGAGCTGTGTCGTGGGGGTGAGCTGTTTGATAGGATTATTCAGAAGGGGCATTACAGTGAGAAAGAGGCGGTCAAGTTGATAAAGACCATAGTTGGTGTGGTCGAAGCTTGTCACTCTCTTGGGGTAATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATAGTCCTAGTGACGACGCTCAGATGAAGGCTACAGATTTTGGCCTCTCTGCTTTTTACATGCCAGGACAAATCTTTTCCGACGTAGTTGGAAGCGCCTACTATATTGCCCCTGAGATTTTGCGCAGGAGTTATGGACCAGAAGCAGATGTATGGAGTGTTGGAGTTATACTTTACATCTTGCTGAGTGGGGTGCCACCTTTTTGGGCCGAAACTGAAGCAGGCATTTTCAGACACATTTTAAACGGAAAGCCAGATTATGAATCTGAGCCATGGCCGAGCATATCAGAATATGCAAAAGATTTGTTGATCAAAATGCTAGAGAAGGACCCGAAGAAAAGAATTTCTGCCCATGAAGTCTTGTGTCACCCTTGGATAAATGATGATAATGTTGCCCCTGACAGACCTCTGGATTCCGCAGTTTTGTCCCGTCTGAAACAGTTCTCAGCAATGAATAAATTGAAGAAGATGGCTTTACGGGTGATAGCAGAAAGACTTTCAGAGGAAGAAATCGGTGGCTTAAAAGAGTTGTTCAAGATGATTGACACGGACAACAGTGGGACTATAACATTTGAGGAACTCAAAGAAGGTCTAAAAAAAGTTGGTTCTAATCTAATGGAATCCGAAATTAAATCCCTAATGGATGCGGCTGACATAGACCAAAGTGGATCAATTGACTATGGTGAATTTCTTGCTGCCACACTACACATGAATAAGATGGAAAGAGAGGAAAATTTAGTCACAGCTTTTTCCTATTTTGACAAAGATGGTAGTGGATACATCACCATTGATGAGCTTGAACAAGCTTGTAAAGAGTTTGGCTTAGGTGACGTAAATCCAGATGTTATGTCAGAAATTGATCTAGACAATGATGGGAGAATTGATTATGGGGAGTTTGTAGCAATGATGAAGCAGGGAGATAGGGTGGCTGGCCGCAGCACAAGAGGCAATTTAAACTTCAATATAGCAGACGCCTTCCAACAAGCAAATGACTCATCCTGA 1491 0.4467 MSLNTEMEQKSSPAKTMSVLPYETPRLRDHYLLGKKLGHGQWGTTYLCTHKESGEQFACKTIPKRKLSSKVDYDDVWREIQIMHHLSENPHVVRIQGAYEDAVFVHLVMELCRGGELFDRIIQKGHYSEKEAVKLIKTIVGVVEACHSLGVMHRDLKPENFLFDSPSDDAQMKATDFGLSAFYMPGQIFSDVVGSAYYIAPEILRRSYGPEADVWSVGVILYILLSGVPPFWAETEAGIFRHILNGKPDYESEPWPSISEYAKDLLIKMLEKDPKKRISAHEVLCHPWINDDNVAPDRPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKEGLKKVGSNLMESEIKSLMDAADIDQSGSIDYGEFLAATLHMNKMEREENLVTAFSYFDKDGSGYITIDELEQACKEFGLGDVNPDVMSEIDLDNDGRIDYGEFVAMMKQGDRVAGRSTRGNLNFNIADAFQQANDSS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0042 496 SMART efh_1 440 469 IPR002048 GO:0005509
Acco01g0042 496 SMART efh_1 372 400 IPR002048 GO:0005509
Acco01g0042 496 SMART efh_1 408 436 IPR002048 GO:0005509
Acco01g0042 496 SMART efh_1 336 364 IPR002048 GO:0005509
Acco01g0042 496 CDD EFh 337 396 IPR002048 GO:0005509
Acco01g0042 496 SUPERFAMILY EF-hand 313 469 IPR011992 -
Acco01g0042 496 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Acco01g0042 496 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
Acco01g0042 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Acco01g0042 496 Gene3D Phosphorylase Kinase; domain 1 32 116 - -
Acco01g0042 496 FunFam Calcium-dependent protein kinase SK5 117 301 - -
Acco01g0042 496 Gene3D - 297 470 - -
Acco01g0042 496 FunFam Calcium-dependent protein kinase 1 33 116 - -
Acco01g0042 496 Gene3D Transferase(Phosphotransferase) domain 1 117 296 - -
Acco01g0042 496 CDD STKc_CAMK 30 288 - -
Acco01g0042 496 FunFam Calcium-dependent protein kinase 1 297 470 - -
Acco01g0042 496 SMART serkin_6 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g0042 496 SUPERFAMILY Protein kinase-like (PK-like) 19 310 IPR011009 -
Acco01g0042 496 Pfam EF-hand domain pair 407 467 IPR002048 GO:0005509
Acco01g0042 496 Pfam EF-hand domain pair 337 397 IPR002048 GO:0005509
Acco01g0042 496 ProSiteProfiles EF-hand calcium-binding domain profile. 444 472 IPR002048 GO:0005509
Acco01g0042 496 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Acco01g0042 496 ProSitePatterns EF-hand calcium-binding domain. 345 357 IPR018247 -
Acco01g0042 496 ProSiteProfiles Protein kinase domain profile. 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g0042 496 Pfam Protein kinase domain 33 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g0042 496 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Acco01g0042 496 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Acco01g0042 496 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Acco01g0042 496 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Acco01g0042 496 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0042 Acco-ChrAcco01 450981 454124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0042 7 496 EF-hand Containing Proteins AT4G09570 77.439 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Acco01g0042 Pkinase 3.2e-72 CL0016