Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0039 ATGGCGGGAACCGTAAATCTCTTCATCTTTTTCTTCTCTCTGTTGCTTGCACTTTATACTGCACAAGCCTGGGTGGAGGTGAACTGGAAGCTGGATATCCCTCCGAGCAATCGTCTTTTCTTCAAGGAACGTGAATCTGCTTTTGGCCCAAGGGCTACAAGTTCGGGAGAACTGCAGGGAATCTTGCATTTGGCGGAGCCGCTTGATGCTTGTGGAGCTCTGGCTAATAATGATGACCAAATTTCAAAAGTAAGAAACCCTTTTGTTTTGATAGTTAGAGGGCAATGTAGCTTTGTGGAAAAGGTAACTAGAGCGCAAGAGGCTGGCTTCAAAGCTGCAATTATCTACGATAATAAAGATGATGGTTTCTTAATTAAAATGACAGGAAATGATTCAGGTGCTATAAATATACCTTCCGTATTCGTACAAAAAGTTGCAGGGAAATTGCTGAGGGGATATGCTGGATCAGAGATTTGGATAACGCCAAATTATGGATCCTCAGAAACAGTACTGTCTATCGTGGTAACTAGGGTGGTGGTTTTAATGACCATATTCATCGTATTGTATGCTTCATGTGGTGTGTGGAGGGTGTTTGGAAGAGGATCTCATAGAAGTTCAGGCATGAGAATGAGTAGGCATTTAGTGAATGAAATCCCCAGTTTAATATTCAGCTCCTCTGCTTTAGAGGATAGTTCCACTTCAACAACATGTGCCATATGCCTTGATGATTATAGCATAGGAGACAAGCTCAGGATCCTGCCCTGCCTTCACAAGTTTCATGCTAGCTGTGTGGATAAATGGCTTACTTCACGGAGAAGCTTCTGTCCTGTTTGTAAGCGTCACGCAAAAACTGGATTGCCTCAAACACCACCACCTTCAGAATCCACATATTTTCTTTCTGCGCAATCTTCTTCCTTATCATCTTCTTCTCCTTCTGTTGGCTCCTCCATAGCCATATCCGTCTCCCCAAGATTATCTGTACCTTCTCATTTGAGCCGTTCTTGCCCATTATCATCTCTGAACCCAACTACTCCCAATATTCTAAGGCTAACCAGTGCTTCAAATTTTTCTCCTTTTGCTTTTGTCCCGTCATCTCCGGAATGCGAAACTGTTTAA 1116 0.4292 MAGTVNLFIFFFSLLLALYTAQAWVEVNWKLDIPPSNRLFFKERESAFGPRATSSGELQGILHLAEPLDACGALANNDDQISKVRNPFVLIVRGQCSFVEKVTRAQEAGFKAAIIYDNKDDGFLIKMTGNDSGAINIPSVFVQKVAGKLLRGYAGSEIWITPNYGSSETVLSIVVTRVVVLMTIFIVLYASCGVWRVFGRGSHRSSGMRMSRHLVNEIPSLIFSSSALEDSSTSTTCAICLDDYSIGDKLRILPCLHKFHASCVDKWLTSRRSFCPVCKRHAKTGLPQTPPPSESTYFLSAQSSSLSSSSPSVGSSIAISVSPRLSVPSHLSRSCPLSSLNPTTPNILRLTSASNFSPFAFVPSSPECETV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0039 371 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 210 289 - -
Acco01g0039 371 Gene3D - 26 163 - -
Acco01g0039 371 SMART ring_2 237 278 IPR001841 -
Acco01g0039 371 Pfam PA domain 68 150 IPR003137 -
Acco01g0039 371 Pfam Ring finger domain 236 279 IPR001841 -
Acco01g0039 371 SMART ringv_2 236 279 IPR011016 GO:0008270
Acco01g0039 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 284 IPR013083 -
Acco01g0039 371 SUPERFAMILY RING/U-box 211 295 - -
Acco01g0039 371 CDD PA_C_RZF_like 41 164 IPR044744 -
Acco01g0039 371 FunFam Putative RING zinc finger domain superfamily protein 206 284 - -
Acco01g0039 371 ProSiteProfiles Zinc finger RING-type profile. 237 279 IPR001841 -
Acco01g0039 371 SUPERFAMILY PA domain 84 159 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0039 Acco-ChrAcco01 423021 425077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0039 41 334 C3H Transcription Factor Family AT1G22670 43.234 4.67e-67 216