Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0022 ATGGCAAACGCAGGTGTTTCGTCTTCTTCTCTGTTGAGTGGAAACAAAGCTTCTCATAATAATCTCAATGCAGTTTGTGTTTACTGTGCTTGGTCTTCTTCTCTGCTGGAAGGTGTTCTTGAAGAAGAATACGACTTGATAGATGGCTCTGAGTTGGGTTGGGTCGAAGCTCGAACCTCATGCGATCACCTTGGTGCGGAGGGATATAAATTGGGTTTTGGGGTAGTGGTGAGGGTGCATATTTGGGTGAAGATGACAGATGTTCAACCGCTGCAACAGAAGCCTGAATCCACTGATGCCCATGCTGAGTTCGAACGTGGGCTGGAGGACTTTATGCGGGGCCACTTGGATGATTGCATGTCCTTTGCTTCATGTAGTTCTGCCCGAACTCAGGATGGGGAGGGTGATGAGGGTGATCAGCTAGTTAGGAGGAGGAGAAGATCTGATCTTGAGGGTGATGATTTAGCAGAGTCATCAGCTTCACGCCGGCGCCACTCACGGATTTTGAGCAGATTGGCTGCCCACCAGGCTCAAGAAATGATGACTACAATTGAGAGGAGAAATCGGGAGTCTGAGTTGATGGCACTTGCAGGACTACACACAGTCTCAATGTTGGATTCCTCTTTTTTGAGGGGATCACAGACTCCAACTTCTGGCCAGGAGGGGGCTGTAGAGAGGCCCAGCACTCAGGCTTCTGCAATTCTTCAGATGTGGCGTGAATTGGAGGATGAACACTTACTTAATAGGGCACGTGAAAGAATGAGGGAAAGGCTGCGTCAACAAAGGATTGCTGACTCTAATGCCAATGGATCAAGTACCATGTCAGATAGTCGGGGAAGTGAGAATCAGGGGAGTTTGGTGGATGCTAGTGAAAGTGAAAATGATTATGGGACTTGGTCACATGATCAGATTCCATCACCGCATGAAAATGGTGACCATAATGGGTCTAGCCGGGAGCAATCTCCTGACCTTGGTGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTGCGGGGATGGATGGAAAGTGGCATCAGTGATCATTCATCTAATGCAAGTCAGAGAAACAATAATCGCAGAGCAGAGTGGCTTGGTGAAACAGAGCGTGGAAGAGTAAGAATTGTCAGGGAGTGGGTGCAAATGACAAGTCAGCAGCGGGGTTCACGTGGGAGCCGGAGGGATAGCCAAGTCACTGAAAGTGGTTCTCGAGTTGAGAGAGTTCAGGATGGACTGTTAACTGATCATGATGAGAGCCAGCCAGAGCATGTACGTAGAGATTTGTTGAGGTTGCGTGGAAGACAAGCTCTGGTTGATTTGCTTGTGAGGGTTGAAAGGGAAAGACAAAGAGAGCTGCAAGGTTTGTTGGAGCACCGTGCTGTTTCTGATTTTGCTCATCGTAACCGCATTCAGTCATTACTCAGAGGTAGATTCCTCCGAAATGAAAGAACTATAGAAGATGAGAGGCCTCCTTCTGTGGCTGCAAATGAATTAGTTCAGTTAAGACAACGTCACACAGTCTCTGGTTTAAGAGAAGGGTTTCGCTCAAGATTAGAAAATATTGTTCGTGGTCATGCTAGCAGCAATTCTGATGCCACATCTAATAGTAATATCAGTGAAACTAGAGGTGACGTGAACCAAGAAAACAATTCAATAGATGCCCAGCATGAAAGTTATCAACAAAGGCAGATTAGGAGCCTTGAAACTGATGTGCAGCAGTTGGCTGATCGAACAGGAACTTTTGAAAGTAGCACAATTGAGAGTATAAGTTGGCAAGGAACTAGTAATCAGGGAGGGAACTGGCAGGAACAAGTTACTGAAGATGGTAATGGAAATTGGCAACGGAGAGCTTATGGTCCATTGAATCAGTTAAGAGATGGAAGTGCTGTTAATGATTGGCGGCAGGATTCTCCAACAAATGTAGAAGGGGAAGATACACAGCCACGAGAAGCTCAGGGAATTTGGCATGAGTCTAATTCAAGGGAAGCTGCTGGTAATTGGTCAGAAGAACCTTCTGGTCCTCCAAGGAATCGACGTGGTGTTCCTTTTAGGAGATTCAATCGATTTCATCCACCTGACGATGACAATGTATATAGCATGGAGCTTAGAGAACTTTTGAGCAGGAGAAGTGTTTCCAATCTTCTTCGCAGTGGCTTCCGTGAAAGTCTGGACCAATTAATCCAGTCATATGTGGAAAGGCAAAATCGTGCACCTATTGACTGGGATTTGCACAGAAACTTGCCAACGCCAACTCCTGCCTCACCTGATAGGGATCCTGAGCAACAGGCGGATGAACGTAATGGGGTTCAACATGATGCCATTAATAGGCCTTCTCTAGTGTTGCCATCTCCTCCAGTTCCTCCACCTCAACCACTTTGGCACCAGGACTTGCATCAGACTGGATGGTCTCGCCATAGCATGCATCGATCTGAAATTGAATGGGAGATGATCAATGATTTGAGATCAGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCTTGCATGGATATGCAACTGGAGTTACAGCGCTCTGTCAGACAGGAAGTGTCTGCAGCGCTGAATCGTACAGCGGGTGAAAGTGGAATGGGGGTCGAGACATCTGAGGATGGCTCTAAATGGGGTCATGTGAAAAAAGGAACTTGTTGTGTTTGTTATGATAGCCATATTGATTCGCTCTTGTACAGATGTGGTCACATGTGCACTTGTTCAAAATGTGCCAATGAATTAGTTCGTGGAGGAGGAAAGTGCCCTTTATGCCGAGCACCTATTGTGGAGGTGATCCGAGCGTATTCCGTTATGTAA 2817 0.4665 MANAGVSSSSLLSGNKASHNNLNAVCVYCAWSSSLLEGVLEEEYDLIDGSELGWVEARTSCDHLGAEGYKLGFGVVVRVHIWVKMTDVQPLQQKPESTDAHAEFERGLEDFMRGHLDDCMSFASCSSARTQDGEGDEGDQLVRRRRRSDLEGDDLAESSASRRRHSRILSRLAAHQAQEMMTTIERRNRESELMALAGLHTVSMLDSSFLRGSQTPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRERLRQQRIADSNANGSSTMSDSRGSENQGSLVDASESENDYGTWSHDQIPSPHENGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNASQRNNNRRAEWLGETERGRVRIVREWVQMTSQQRGSRGSRRDSQVTESGSRVERVQDGLLTDHDESQPEHVRRDLLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTIEDERPPSVAANELVQLRQRHTVSGLREGFRSRLENIVRGHASSNSDATSNSNISETRGDVNQENNSIDAQHESYQQRQIRSLETDVQQLADRTGTFESSTIESISWQGTSNQGGNWQEQVTEDGNGNWQRRAYGPLNQLRDGSAVNDWRQDSPTNVEGEDTQPREAQGIWHESNSREAAGNWSEEPSGPPRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQNRAPIDWDLHRNLPTPTPASPDRDPEQQADERNGVQHDAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEMINDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRTAGESGMGVETSEDGSKWGHVKKGTCCVCYDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSVM 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0022 938 MobiDBLite consensus disorder prediction 340 362 - -
Acco01g0022 938 Pfam Zinc finger, C3HC4 type (RING finger) 883 930 - -
Acco01g0022 938 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 873 936 IPR013083 -
Acco01g0022 938 MobiDBLite consensus disorder prediction 574 609 - -
Acco01g0022 938 MobiDBLite consensus disorder prediction 407 421 - -
Acco01g0022 938 MobiDBLite consensus disorder prediction 343 359 - -
Acco01g0022 938 MobiDBLite consensus disorder prediction 132 164 - -
Acco01g0022 938 ProSiteProfiles Zinc finger RING-type profile. 886 925 IPR001841 -
Acco01g0022 938 MobiDBLite consensus disorder prediction 380 421 - -
Acco01g0022 938 MobiDBLite consensus disorder prediction 209 230 - -
Acco01g0022 938 MobiDBLite consensus disorder prediction 626 644 - -
Acco01g0022 938 MobiDBLite consensus disorder prediction 263 305 - -
Acco01g0022 938 MobiDBLite consensus disorder prediction 574 681 - -
Acco01g0022 938 SUPERFAMILY RING/U-box 885 931 - -
Acco01g0022 938 Coils Coil 815 835 - -
Acco01g0022 938 MobiDBLite consensus disorder prediction 260 328 - -
Acco01g0022 938 MobiDBLite consensus disorder prediction 739 765 - -
Acco01g0022 938 MobiDBLite consensus disorder prediction 126 164 - -
Acco01g0022 938 CDD mRING-HC-C3HC5_NEU1 883 935 - -
Acco01g0022 938 MobiDBLite consensus disorder prediction 523 548 - -
Acco01g0022 938 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 194 938 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0022 Acco-ChrAcco01 294230 301259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0022 850 932 C3H Transcription Factor Family AT3G06140 32.530 1.80e-07 52.4