Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0013 ATGGGTCGTGATTCCCCATCTTCACTCGCTCCGGGCTTCCGTTTCCACCCCACCGACGAAGAACTCGTTCGTTACTACCTCAGACGCAAGGTCTCCGGCAAATCCTTTCGTTTCGACCCTATCGCCGTCGTCGACATCTATAAATCCGAACCTTGGGACCTTCCATGTCAGTCGAAGCTGAAAAGCAGGGACTTGGAGTGGTACTTCTTCGGTGCACTGGACAAGAAGTATGGAAATGGATCGAGGACGAATCGGGCTACTGAGAAAGGATACTGGAAGACTACGGGCAAGGATCGCCCAGTTCGACACAGCTCTTGTACCATCGGAATGAAGAAGACCCTCGTTTATCATAGTGGGCGGGCGCCGCGCGGTACCCGTACCAATTGGGTCATGCACGAGTACAGATCAGCTGATAAAGAATTGGCAAAAGCAGAAATACCACAGGATGCGTTTGTGCTTTGTAGAATTTTCCAGAAGAGTGGTTCTGGGCCAAAGAATGGGGAGCAGTATGGTGCCCCCTTTATAGAGGAGGAATGGGAAGATGATGATGTTGCCGTGGCTCCACTGCCCAGTGATGAGGCTGCAACTGATGAAATAATTGTCGGTGATGATGCTTATGTTGAAACGGATGACCTTGATCAGTACCTTGATATGGATGTGGCTTCTGAATGTGCTGGTCATGCATTAAACTTCTATCATGGGGAGTGCAGCAGTTATCCTGAGCATTCCCAAGAATTGATTGAAGATCAAGAGCCCTTGGCAGGAACTTCTGGAACTTGTGAGCCTCATGATGACCTTTTCTCAAATAAGCCTGACCAACATGCTTCAGATAGCGAACCAGTGAAAGATGGCATCAAGACTGAAGCAACTCATGAAGGATATTTCTTGAATGACAATTGCACTTTTGATGAGACATACTTGGATGCCACTGATGGATCATTCCTGGAAACTGATGATCTGGCAAATCCTGCTGATACTGACGTACTTGAAGAGTATCTTACATACTTTAATGGCGTTGATGATATTTCCCAGTATATCTCTTTCGATTCTCCTGAGTTGACAGGGAGTGAAAACCCTGATGCTGACCAAGGACCAGCTTTAACCCAACTGAATGTGGGCGGAGAAACCAAGGATATTCTCATGGAAGATAAAATTGATGTGGAAGCCCATTCTAGCAAAGAAGCTTCTTCTTTGAAGCAGCATCTAGAGGCATCAAAATTGGTGTCAGGAAATACATACCCATTTATGAAGCAGGCCAGTCACTTGTTGGGCAGTATCCCTACTCCCCATGCATTTACTTCAGAGTTTCCTCCTAAAGAAATCACTCTCCGTCTTCATTCCACGGGTCAATGTTCCAATTCAGCTCATGTAACTGCAGGTATGATGAGAATAACAGACTTCTCTGTAACAGACAACAGGATGGACTGGATGCTGGGCAAAAATGGAGAGTTCAGTGTTGTAATCTCATCTTGCTTTTGGCCTGATGTTAACTCTGTTGCTTCAGTGCCTATTTCTGGTTTACTCTCTGGGAAGTCTGCATATGTAGTGTCACACGGCTGGATATTCTTAGTCTTCTTTTCGGTGCTAATTGTTTCATTGAGTTTCAAGATTGGCAGTTTCATGTATACCAGCAAATGA 1638 0.4567 MGRDSPSSLAPGFRFHPTDEELVRYYLRRKVSGKSFRFDPIAVVDIYKSEPWDLPCQSKLKSRDLEWYFFGALDKKYGNGSRTNRATEKGYWKTTGKDRPVRHSSCTIGMKKTLVYHSGRAPRGTRTNWVMHEYRSADKELAKAEIPQDAFVLCRIFQKSGSGPKNGEQYGAPFIEEEWEDDDVAVAPLPSDEAATDEIIVGDDAYVETDDLDQYLDMDVASECAGHALNFYHGECSSYPEHSQELIEDQEPLAGTSGTCEPHDDLFSNKPDQHASDSEPVKDGIKTEATHEGYFLNDNCTFDETYLDATDGSFLETDDLANPADTDVLEEYLTYFNGVDDISQYISFDSPELTGSENPDADQGPALTQLNVGGETKDILMEDKIDVEAHSSKEASSLKQHLEASKLVSGNTYPFMKQASHLLGSIPTPHAFTSEFPPKEITLRLHSTGQCSNSAHVTAGMMRITDFSVTDNRMDWMLGKNGEFSVVISSCFWPDVNSVASVPISGLLSGKSAYVVSHGWIFLVFFSVLIVSLSFKIGSFMYTSK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0013 545 Pfam No apical meristem (NAM) protein 11 135 IPR003441 GO:0003677|GO:0006355
Acco01g0013 545 MobiDBLite consensus disorder prediction 253 281 - -
Acco01g0013 545 SUPERFAMILY NAC domain 8 159 IPR036093 GO:0003677|GO:0006355
Acco01g0013 545 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Acco01g0013 545 MobiDBLite consensus disorder prediction 265 281 - -
Acco01g0013 545 FunFam Nac domain-containing protein 86 18 162 - -
Acco01g0013 545 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Acco01g0013 545 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0013 Acco-ChrAcco01 216250 219295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0013 1 533 NAC Transcription Factor Family AT5G04410 44.637 3.77e-142 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco01g0013 NAM 4e-36 No_clan