Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g0005 ATGATGATTCCCATTAGCTGCTGCGTCATTCTCTCTGTATGGCTCCTCACCTTCCCTTTCTCTCCGCCGACCATCAAAGCTGCCTTCAACCCTGAACATGTGGTTATGGATGTTCAAAGGAGAATCAACGCGTCTCTCTCCAGAAGACAACTCCTTCCCGTCGACAAATTCGACCAAGCTCCAGGCTGCCTCACGGGCAATCCCATCGACGACTGCTGGCGCTGCGACCCCAACTGGGCCGCCGACCGCCAGAAGCTAGCCGACTGTGGTATTGGGTTCGGCACCGACGCGGTGGGCGGCAAGGGCGGCCAGTTCTACATCGTCACCGACCCTTCCGATGACGACCCGGTGAACCCAGCTCCGGGAACTCTTAGGCACGCTGTAATCCAAGACGCCCCCCTCTGGGTCGTCTTCGCAGGCAACATGGTGATCACCCTGAAGCACGAGCTGATGTTCAACAGCTTCAAGACGATCGACGGACGTGGCGCCAGCGTGCACATCACCGGTAACGGCTGCATCACGCTGCAGTACGTAACGAACATCATCATCCACAACGTGCACATCCACCACTGCAGGCCGTCAAGCAAAACGATGATACGGGCGAGTCCAACAAATGTGGGATTTAGAGGGGAATCAGACGGCGACGGGGTGTCGATCTATGGGTCACAGAAGCTCTGGATAGACCATTGCACGCTGGCGTATTGCACGGACGGACTTATAGACGCGATAATGGGGTCGACGGGGATAACGATATCGAACAACCATTTCTCTCATCACGACAAGGTGATGCTACTGGGGCATGATGATAGGTATGTAGGGGATAGGAGAATGCAAGTGACAGTGGCATTCAATCACTTCGGGGAGAAGCTGGTGCAGCGGATGCCACGTTGCAGATACGGATACGTACACGTGGTGAACAACGATTACACGCAATGGGAAATGTACGCCATCGGAGGCAGTGCGGCGCCCACCATAAACAGCCAGGGTAACCGCTACACTGCTCCGCCCAACGCTAATGCCAAGGAAGTGACCAAGAGGGTGGGCACAGATGAGAGAGGGTGGGCCAGTTGGAATTGGAAGACGGAAGGGGACTTAATGGTGAACGGAGCATACTTCGTGGCATCAGGCGATACGGTGAGCACTCAATACGAGCGGGACTCGTCTCTGCCGCCCCAATCCGCCCTTCACATCGACCTCCTCACCCTCAACGCCGGCGTCTTCAATGACCCCAGGGAAAGTGGGGATGTATATCCCAGCGTCTTCATGGAGAACGGCGATGGAGTGATGATGCCCAGGCATGGCACCTCCAGTGGTGCTTCACCGCCCTCTCCATTCTTTTCACTTCTCCTTTTCTGCACTGTTGCTTCTACTATTTGTTCTATTTCACCAACACTATTATCATCCTTCTGCCCAATATTGTTAGTTTAA 1428 0.5483 MMIPISCCVILSVWLLTFPFSPPTIKAAFNPEHVVMDVQRRINASLSRRQLLPVDKFDQAPGCLTGNPIDDCWRCDPNWAADRQKLADCGIGFGTDAVGGKGGQFYIVTDPSDDDPVNPAPGTLRHAVIQDAPLWVVFAGNMVITLKHELMFNSFKTIDGRGASVHITGNGCITLQYVTNIIIHNVHIHHCRPSSKTMIRASPTNVGFRGESDGDGVSIYGSQKLWIDHCTLAYCTDGLIDAIMGSTGITISNNHFSHHDKVMLLGHDDRYVGDRRMQVTVAFNHFGEKLVQRMPRCRYGYVHVVNNDYTQWEMYAIGGSAAPTINSQGNRYTAPPNANAKEVTKRVGTDERGWASWNWKTEGDLMVNGAYFVASGDTVSTQYERDSSLPPQSALHIDLLTLNAGVFNDPRESGDVYPSVFMENGDGVMMPRHGTSSGASPPSPFFSLLLFCTVASTICSISPTLLSSFCPILLV 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g0005 475 Gene3D - 66 408 IPR012334 -
Acco01g0005 475 SUPERFAMILY Pectin lyase-like 67 406 IPR011050 -
Acco01g0005 475 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Acco01g0005 475 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Acco01g0005 475 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Acco01g0005 475 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Acco01g0005 475 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Acco01g0005 475 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Acco01g0005 475 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Acco01g0005 475 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Acco01g0005 475 PANTHER PECTATE LYASE 18-RELATED 30 408 IPR045032 GO:0030570
Acco01g0005 475 FunFam Pectate lyase 66 408 - -
Acco01g0005 475 Pfam Pectate lyase 148 328 IPR002022 -
Acco01g0005 475 SMART amb_all 141 338 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g0005 Acco-ChrAcco01 98733 100645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g0005 1 407 Polysaccharide Lyase AT3G53190 63.571 0.0 529