Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1415 ATGAACACTCAGAAGATTGATTGCCAAGCTAGAATTCAGCAGAACCATGGAGTGATTCCTGATTATGGAATTGAATTCGGCCCTCGTTCTTCCCAGTTTTTAGGTGCTTGGAACATGGGAATTTGCAGTCAGCAGCCATTGGCCACAGATGGAGGATCACAGCTGCAGACCTTGGGGCCTGCAAAACCATCCTCCACAATTATGAGCCGCTTTGATTCGCCGGCCTCCGCCTTCTATGCCACCGAGAGATTCATGGGGTTTTCACAGTATGATCACCAAGCTAGTAACCCCCTTCTGTATTCCCAAAGCTCCACTTCTTGTGATTCAAAACTTGATAACTTTTCAGTCGATTCGAATTCAACCCCACCCGCTGATCCCAACTTTCAATTCAGAAATACCTTCCAATCAGTAATGAGAGCTAGTTCTGAAAATCCCAATACAATCCAATGCCCTTCAATTCCTTTTGATGGAAACCAGGATATTAGAGTTTGTAGCTACTTGTATGGTTCTCCACTTGCACAGCAGGCCCAGTGTGCTAGATCATCCTCTTCTGGGGGTGTTTCTGTTGCCCCTGCCAATCCTGTTTCCCCAATTCTTCACAGTAAAGCCCGAATCAGGTGGACTCCAGATCTTCATGAGCGCTTTGTTGAGTGTGTAAATCGCCTGGGTGGAGCTGAAAAAGCAACCCCAAAAGCCATACTCAAGCTGATGGATTCAGAAGGACTGACCATCTTTCATGTGAAAAGCCATTTGCAGAAATATCGAATTGCAAAGTACATGCCAGAATCTGCAGAAGGGAAATCTGAGAAAAGGGCCAGCACAAACGATTTGCCACATCTTGATAACAAAACCAGTGGCATGCAGTTCAAAGAGGCACTGCAGATGCAGCTTGATGTCCAGAGGCGTCTCCATGAGCAGTTAGAGGTAAACATGATACAGAGAAATTTGCAGTTGAGGATTGAAGAACAAGGGAGGCAGCTGAAAATGATGTTTGAACAGCAGCAACAGACGAATAGGAGCTTCATGGAAGCTGATGAGGACTTGGATATCATGTCACTGGAGGACCCGTCAACCAGTCTGGACCAAGTAGAAAACTTGAGTGCACAGGGGTCTGGGAACACTCGGTTTCCATCAAAGATAAGTTAG 1146 0.4599 MNTQKIDCQARIQQNHGVIPDYGIEFGPRSSQFLGAWNMGICSQQPLATDGGSQLQTLGPAKPSSTIMSRFDSPASAFYATERFMGFSQYDHQASNPLLYSQSSTSCDSKLDNFSVDSNSTPPADPNFQFRNTFQSVMRASSENPNTIQCPSIPFDGNQDIRVCSYLYGSPLAQQAQCARSSSSGGVSVAPANPVSPILHSKARIRWTPDLHERFVECVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRIAKYMPESAEGKSEKRASTNDLPHLDNKTSGMQFKEALQMQLDVQRRLHEQLEVNMIQRNLQLRIEEQGRQLKMMFEQQQQTNRSFMEADEDLDIMSLEDPSTSLDQVENLSAQGSGNTRFPSKIS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1415 381 Coils Coil 290 310 - -
Vvi8g1415 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 193 356 IPR044848 GO:0003700
Vvi8g1415 381 MobiDBLite consensus disorder prediction 262 277 - -
Vvi8g1415 381 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 257 IPR006447 GO:0003677
Vvi8g1415 381 MobiDBLite consensus disorder prediction 262 282 - -
Vvi8g1415 381 MobiDBLite consensus disorder prediction 355 381 - -
Vvi8g1415 381 Pfam MYB-CC type transfactor, LHEQLE motif 287 337 IPR025756 -
Vvi8g1415 381 Gene3D - 201 260 - -
Vvi8g1415 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 259 IPR017930 -
Vvi8g1415 381 FunFam Myb family transcription factor 201 259 - -
Vvi8g1415 381 Pfam Myb-like DNA-binding domain 206 255 IPR001005 -
Vvi8g1415 381 SUPERFAMILY Homeodomain-like 200 256 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1415 Vvi-Chr8 20079891 20081610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1415 202 334 G2-like Transcription Factor Family AT4G28610 62.222 5.57e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi8g1415 Myb_CC_LHEQLE 9.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1415 - - vri:117919808 748.814