Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0640 ATGTCTTACTTTTATATAAAAAAAATTCTAAATTTGAAAACAAAAGTATATCGCTATCCCTTTTGTATTTTGAAAAGAATGTCCAACAATTTGGACCTAAGTTTGGTTTGCATGGAGTCTTTACTAGAAGTTCCAAGCACCCTTAGCAAACCTAAGAAAAGATGGCACTTGGCCTTCGCTACCATTTATTGTTCCCGGGCTCTATACTCCCTTCTCAATCATCCTGTCTCCAACAATAAGAAGAGGAGCAAAACCCTGCTTACTTCACCCCCGTCTTTTGTCATACTCAATGTTGAGCCCCAGCATGGATTCTCCAACTTTGATCAACATAGCCTCACTCAAATAGTGAAGCACAAAAGCTTGACCCAGCTTCTTGAGCTTGGAGGTGTTGAAGGTGTGGCCATTATTCTAGAAACAGATGTCAAAAATGGCATCCATGGTGCTGTTGAAGATGTCACCCGCAGGCGAAAAGCTTTTGGTTCTAACGCCTACAGGAAGCCGCCTACAAAGAGCTTCTTCTACTTTGTGGTGGAAGCTATTAAGGATGTTACCATTCTCATACTCGTAGCTTGTGCCACTCTTTCTCTTGGCTTTGGCATTAAAGAGCAAGGGCCGAAAGAAGGGTGGTATGACGGCGGAAGCATACTGGTCGCTGTCTTTCTAGTCATTTCCGTCTCTGCTGTGAGTAACTTCAGGCAGAATAGACAGTTCGATAAGTTGTCTAAAGTCAGCGATAATATCCAGGTTGATGTTGTCCGGGATGGGCGACGTCAACAGATTTCTATATTTGAGGTCGTTGTTGGAGATGTTGTTTGCTTAAAGATCGGAGATCAAGTTCCCGCCGATGGATTATTCTTAGATGGGCATTCATTACAAGTGGATGAATCAAGTATGACAGGGGAGAGTGACCATGTGGAAGTCAATACCAGCCTGAATCCATTTTTGTTTTCTGGAACAAAAGTCGCTGATGGATATGCTCGGATGGTTGTGACATCTGTTGGTATGAACACAACATGGGGTGAGATGATGAGCACAATCAGCCGTGATACTAATGAACAGACACCCTTACAAGCCAGGCTTAACAAGCTTACTTCATCAATAGGTAAGGTTGGTTTGGCAGTTGCGTCTCTTGTTCTTCTGGTGTTGCTGGTTCGCTACTTCACAGGGCATACAGAAGATGAGAATGGAAATCAGGAGTTCCATGGCAATCTGACGAAGGCTGATGATGTGGTGAATGCTGTGGTGAGAATCATTGCAGTTGCAGTTACCATTGTGGTTGTGGCAATCCCTGAAGGCTTGCCTTTGGCTGTCACACTCACTCTAGCTTATTCAATGAAGAGAATGATGGCTGAACAGGCTATGGTTCGAAGGCTCTCTGCTTGTGAGACAATGGGTTCTGCCACCACCATTTGTACCGACAAAACAGGTACCCTCACTCTGAACCAGATGAAGGTGACAAAGTTTTGGCTTGGCCAAGACCCTATTCGAGAGGATGCTTCCTCTTCAATTGCCACAAATGTCCTCAAACTGATACAACAAGGTGTTGCCCTAAATACTACTGGTAGCATTAACATGGCTACCTCAGGATCAAGATACGAGTTCTCAGGCAGTCCTACTGAAAAAGCAATTCTTTCTTGGGCGGTTCTGGAGCTGAACATGGATATGGAGGAATTGAAGCAGACTTGTACAATTCTCCAGGTAGAAGCATTCAATTCAGAGAAGAAAAGAAGTGGGGTTGCATTGAGGAGCAAAGCTGACAACAAAGTCCATGTTCACTGGAAAGGAGCAGCAGAGATGATACTAGCAATGTGTTCTACTTACTACGATGCTTCTGGAAGCATGAGAGATCTTGATCATGTTGAAAGGACAACATTTGAACAAATAATCCAAGGTATGGCTGCTAGCAGCCTCCGTTGCATTGCTTTTGCACACAGCCAACTTCCAGAAGAAGAGCATGAAATTAGAGAAGCCACCCAAAAGTTAAAAGAAGACAGCTTGACCCTTATAGGGCTTGTGGGGATAAAGGACCCATGTAGAGCAGGGGTGAGAAAAGCCGTGGAAGATTGCCAATATGCCGGAGTGAATGTCAAAATGATCACCGGTGATAATATTTTCACTGCAAGAGCTATAGCTACTGAATGTGGAATACTAAGACCTGATCAGGACATGAACAATGAAGCAGTCGTAGAAGGTGAAGTATTCCGGCAGTACACCCCAGAAGAGAGAATGGAGAAAGTTGATAAAATCCGTGTGATGGCTAGATCCTCTCCCCTTGATAAACTTCTCATGGTACAGTGCTTGAAACAAAAAGGTCATGTTGTAGCAGTCACAGGTGATGGCGCAAATGATGCACCAGCATTAAAAGCAGCTGACATAGGACTTTCTATGGGCATTCAAGGCACAGAAGTGGCAAAGGAGAGCTCAGATATCATCATCTTGGATGATAATTTTGCTTCAGTGGCCACAGTTTTGAGATGGGGAAGATGTGTTTATAACAACATCCAGAAATTCATCCAGTTTCAGCTGACGGTGAATGTTGCAGCCCTCGTAATCAACTTTGTGGCAGCAGTTTCAGCTGGTGAGGTCCCGTTGACAGCAGTGCAGTTATTGTGGGTGAACTTGATCATGGACACTTTAGGTGCCCTGGCCCTTGCCACAGAGCAACCCACCAAGGAGCTGATGGAGAAACCACCCATGGGTCGGACAGAGCCGCTTATCTCCAACATCATGTGGCGGAATCTATTAGCCCAAGCTTTGTATCAGATAGCTGTCCTCTTGACCCTACAGTTCAAAGGAGAATCAATCTTTGGGGTAAGTGAGAAGGTAAAGGATACCTTGATATTCAATACATTTGTACTTTGCCAAGTCTTCAATGAATTCAATGCAAGGAAACTCGAGAAGAAGAATGTGTTTAAGGGGTTACATAAGAACAAGCTATTTCTGGGGATCATTGGGATAACCATTATCCTTCAGGTGGTTATGGTGGAATTTTTGAAGAAATTTGCAGATACAGAGAGGTTGGATTGGGGACAATGGGGTGCATGCATTGGAATTGCTGCTGCATCTTGGCCAATCGGCTGGGTTGTCAAGTGCGTACCTGTTTCAGATAAACCCTTTAAGCTATCTAAAGTGGTAGGAATATCACTTCAGCGATACAAATTACTTTTTCTGAGTTTAGGTCCACATAAATGTAATATGTGA 3201 0.4386 MSYFYIKKILNLKTKVYRYPFCILKRMSNNLDLSLVCMESLLEVPSTLSKPKKRWHLAFATIYCSRALYSLLNHPVSNNKKRSKTLLTSPPSFVILNVEPQHGFSNFDQHSLTQIVKHKSLTQLLELGGVEGVAIILETDVKNGIHGAVEDVTRRRKAFGSNAYRKPPTKSFFYFVVEAIKDVTILILVACATLSLGFGIKEQGPKEGWYDGGSILVAVFLVISVSAVSNFRQNRQFDKLSKVSDNIQVDVVRDGRRQQISIFEVVVGDVVCLKIGDQVPADGLFLDGHSLQVDESSMTGESDHVEVNTSLNPFLFSGTKVADGYARMVVTSVGMNTTWGEMMSTISRDTNEQTPLQARLNKLTSSIGKVGLAVASLVLLVLLVRYFTGHTEDENGNQEFHGNLTKADDVVNAVVRIIAVAVTIVVVAIPEGLPLAVTLTLAYSMKRMMAEQAMVRRLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGQDPIREDASSSIATNVLKLIQQGVALNTTGSINMATSGSRYEFSGSPTEKAILSWAVLELNMDMEELKQTCTILQVEAFNSEKKRSGVALRSKADNKVHVHWKGAAEMILAMCSTYYDASGSMRDLDHVERTTFEQIIQGMAASSLRCIAFAHSQLPEEEHEIREATQKLKEDSLTLIGLVGIKDPCRAGVRKAVEDCQYAGVNVKMITGDNIFTARAIATECGILRPDQDMNNEAVVEGEVFRQYTPEERMEKVDKIRVMARSSPLDKLLMVQCLKQKGHVVAVTGDGANDAPALKAADIGLSMGIQGTEVAKESSDIIILDDNFASVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEQPTKELMEKPPMGRTEPLISNIMWRNLLAQALYQIAVLLTLQFKGESIFGVSEKVKDTLIFNTFVLCQVFNEFNARKLEKKNVFKGLHKNKLFLGIIGITIILQVVMVEFLKKFADTERLDWGQWGACIGIAAASWPIGWVVKCVPVSDKPFKLSKVVGISLQRYKLLFLSLGPHKCNM* 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0640 1066 Pfam Cation transporting ATPase, C-terminus 862 1031 IPR006068 -
Vvi5g0640 1066 SFLD C1.7: P-type atpase like 453 830 - -
Vvi5g0640 1066 Coils Coil 548 568 - -
Vvi5g0640 1066 PRINTS H+-transporting ATPase (proton pump) signature 777 793 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0640 1066 PRINTS H+-transporting ATPase (proton pump) signature 625 643 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0640 1066 PRINTS H+-transporting ATPase (proton pump) signature 809 834 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0640 1066 FunFam Calcium-transporting ATPase 223 347 - -
Vvi5g0640 1066 PANTHER CATION TRANSPORTING ATPASE 85 1035 - -
Vvi5g0640 1066 PRINTS P-type cation-transporting ATPase superfamily signature 801 813 - -
Vvi5g0640 1066 PRINTS P-type cation-transporting ATPase superfamily signature 294 308 - -
Vvi5g0640 1066 PRINTS P-type cation-transporting ATPase superfamily signature 692 702 - -
Vvi5g0640 1066 PRINTS P-type cation-transporting ATPase superfamily signature 777 796 - -
Vvi5g0640 1066 PRINTS P-type cation-transporting ATPase superfamily signature 471 485 - -
Vvi5g0640 1066 PRINTS P-type cation-transporting ATPase superfamily signature 670 681 - -
Vvi5g0640 1066 ProSitePatterns E1-E2 ATPases phosphorylation site. 473 479 IPR018303 -
Vvi5g0640 1066 SUPERFAMILY HAD-like 469 882 IPR036412 -
Vvi5g0640 1066 SFLD p-type atpase 453 830 IPR044492 -
Vvi5g0640 1066 Pfam E1-E2 ATPase 248 449 - -
Vvi5g0640 1066 Gene3D - 178 1030 - -
Vvi5g0640 1066 FunFam Calcium-transporting ATPase 794 1036 - -
Vvi5g0640 1066 Gene3D - 481 677 IPR023299 GO:0000166
Vvi5g0640 1066 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 477 682 IPR023299 GO:0000166
Vvi5g0640 1066 Gene3D - 468 822 IPR023214 -
Vvi5g0640 1066 NCBIfam HAD-IC family P-type ATPase 215 384 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0640 1066 NCBIfam HAD-IC family P-type ATPase 413 501 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0640 1066 NCBIfam HAD-IC family P-type ATPase 748 858 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0640 1066 Gene3D - 150 347 - -
Vvi5g0640 1066 Pfam haloacid dehalogenase-like hydrolase 468 791 - -
Vvi5g0640 1066 SUPERFAMILY Calcium ATPase, transduction domain A 248 345 IPR008250 -
Vvi5g0640 1066 SUPERFAMILY Calcium ATPase, transmembrane domain M 127 1034 IPR023298 -
Vvi5g0640 1066 CDD P-type_ATPase_Ca_PMCA-like 152 910 - -
Vvi5g0640 1066 Pfam Cation transporter/ATPase, N-terminus 128 195 IPR004014 -
Vvi5g0640 1066 FunFam Calcium-transporting ATPase 481 677 - -
Vvi5g0640 1066 FunFam Calcium-transporting ATPase 671 822 - -
Vvi5g0640 1066 NCBIfam calcium-translocating P-type ATPase, PMCA-type 105 1034 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0640 Vvi-Chr5 5954823 5960787 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0640 36 1039 Primary Pumps ATPases AT3G22910 69.841 0.0 1363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0640 K01537 - vvi:100240964 1957.18