Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1067 ATGGCTAACAAGTGTGTTATTTATGCACCAGATAACACAAATGGTCTCAGCTGTTACTCATCCACTCCCTCCTCTTCTTCATCTTCCACTACTTCTCTTGGGACTTCCATGGGGATGGTTTTTGCAGACATGGGTGCTCTTTCTATAAATCCAAACTATGGCGTGGTGCCAGCTGTTTCTTCTTCACAAGAGAGTACTTATGTGCGTAAGGGCCCAAGTGAGGTAGAAAATGGGAGAGCTTGCTGGGGTTTTCCTTTCATGGGAAACTGCACTGCTGGAAGCTTGGAAGAACACCACAACAGTGATGTGGGTGATGGTAAGGGCTCTGATTGCAGTGATGGGTTTGGGGAAAATAATGAAACCATGGATCTCAATGCCAACATAAATGAAGAGAACCCTAATGAGAATATCGTCAGTGGTAAGGAAACCGATAGTGGGCATTCAAAACTGTGTGCCAGAGGGCATTGGAGGCCTGCAGAGGATACCAAGCTCAAGGAACTTGTGGCGCTTTATGGCCCTCAGAACTGGAACCTTATAGCAGAGAAGTTAGAAGGGAGATCAGGTAAGAGCTGTAGATTGAGATGGTTTAACCAGCTGGACCCAAGGATCAATAGAAGAGCTTTCAGTGAAGAGGAAGAGGAGAGGCTAATGGATGCTCATAGACTGTATGGTAACAAATGGGCCATGATAGCAAGGCTTTTCCCTGGGAGAACTGATAATGCGGTCAAGAACCACTGGCATGTCATAATGGCTAGGAAGTATAGAGAACAATCGAGTGCTTATAGGAGGAGGAAGCTGAGTCAATCTGTTTACAGAAGGATGGAGGAGGACCCAAGCTTTGTCTGCAGGGACACAGCCACGAGAACAGAAACAATGCCACCGTATTCCATCAATCTCTCCAGTGGAGGAATCAACAACAACCTCTCTCCTTTCCCATTTGCAACCTTCAATGGAGCTGTTGGTGGGGTTGTTTATGGTTCAAATGGTTCACCCCAGGTGAACAGTGGGGGAGAAGCAATCTCAAGCAGCAAGCTCCCTCCTCACACTGGGTTTTGTGCGCAACAGACACCATTCGAGTTCTTCTCTGGTCCCAAGAGCCATGACATGATAAGCATGTTCAGCCAGCACAGATCTTGGGATAGGCCAAGGGACGAGCCCAACAATAATACGTCTGGCTTCTATCCCCAATACCCTCCATTGATGATGGCAATGCAACAGTCAAACTACCATAACACTTGTAATTTCCCAAATTCCACTGCATCAACCCCTCAAGCTTCTGCCACTGAACCTTCATCATCAGAGAACAGAGTAGCCAGTCATTTTGAGACCATTCCACCACCATTCATAGACTTTCTTGGGGTAGGAGCCACATGA 1374 0.4687 MANKCVIYAPDNTNGLSCYSSTPSSSSSSTTSLGTSMGMVFADMGALSINPNYGVVPAVSSSQESTYVRKGPSEVENGRACWGFPFMGNCTAGSLEEHHNSDVGDGKGSDCSDGFGENNETMDLNANINEENPNENIVSGKETDSGHSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMDAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRKLSQSVYRRMEEDPSFVCRDTATRTETMPPYSINLSSGGINNNLSPFPFATFNGAVGGVVYGSNGSPQVNSGGEAISSSKLPPHTGFCAQQTPFEFFSGPKSHDMISMFSQHRSWDRPRDEPNNNTSGFYPQYPPLMMAMQQSNYHNTCNFPNSTASTPQASATEPSSSENRVASHFETIPPPFIDFLGVGAT* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1067 457 ProSiteProfiles Myb-like domain profile. 200 250 IPR001005 -
Vvi1g1067 457 PANTHER MYB PROTEIN-RELATED 141 406 - -
Vvi1g1067 457 ProSiteProfiles Myb-like domain profile. 153 199 IPR001005 -
Vvi1g1067 457 Pfam Myb-like DNA-binding domain 153 199 IPR001005 -
Vvi1g1067 457 Pfam Myb-like DNA-binding domain 205 248 IPR001005 -
Vvi1g1067 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 254 IPR017930 -
Vvi1g1067 457 MobiDBLite consensus disorder prediction 412 438 - -
Vvi1g1067 457 FunFam MYB transcription factor 206 276 - -
Vvi1g1067 457 Gene3D - 206 276 - -
Vvi1g1067 457 CDD SANT 156 197 IPR001005 -
Vvi1g1067 457 CDD SANT 207 247 IPR001005 -
Vvi1g1067 457 SUPERFAMILY Homeodomain-like 153 246 IPR009057 -
Vvi1g1067 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 199 IPR017930 -
Vvi1g1067 457 SMART sant 204 252 IPR001005 -
Vvi1g1067 457 SMART sant 152 201 IPR001005 -
Vvi1g1067 457 Gene3D - 153 204 - -
Vvi1g1067 457 FunFam MYB transcription factor 153 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1067 Vvi-Chr1 12222018 12223924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1067 123 270 MYB Transcription Factor Family AT1G69560 75.333 6.72e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi1g1067 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1067 K09422 - vvi:100253313 910.212