Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0976 ATGGCAGCAGTTAAATCCAGTTCCTTGCTTCTCCTTTTTTTCGTGTTATTCGCTGTTATAGCGCCAACAATACGAGCCCACATTGCAGAATATGATGATTATTGGAAGGAGCGAGAAGAGGAAGCCAAGAAAGCTGCCCTCGAAGCATTCCATCCGACACCGCAGGAAGTCAACGACCATTTCAATCTGCATGTTGAGGATGAGCTAACGGGGAGCAATGGAACAAGGAGGAGCCTGAGAGTTAACAAGGGACCATGCAAGGCTACAAATCCTATTGATCGATGCTGGAGGTGCCGTCCAAATTGGGCTTCACAACGCAAAAGGCTAGCTGACTGTGTCCTCGGTTTTGGGCGGAACACAGTGGGAGGAAAGTATGGCAAATACTACTTCGTGACCGATCCCTCCGATAATGACATGGTGAACCCTAAGAAGGGAACATTACGCCATGCCGTGATCCAGCCAAGGCCGCTGTGGATTGTGTTTGCTCGCAGTATGATAATTAGGTTGAATCAGGAGCTGATCATGACCAGTGACAAAACCATTGATGGAAGGGGAGTCAATGTCCATATCGCCTATGGTGCCGGCATTACAATTCAGTTCGTCAAGAATGTGATCATCCATGGCCTCCACATTCACGACATTGTTTCAGGCTCAGGAGGACTTATTAGGGATTCTGTCAATCACTTTGGCTATAGAAGCAGAAGTGATGGTGATGGAATCTCCATTTATGGTTCATCCCACGTTTGGATTGACCATAATTCCATGTCCAATTGTAAGGATGGACTGATCGATGCCATCCAAGGATCCACCGCCATCACCATCTCCAACAACCATTTCACCAAACACAATGAGGTGATGTTGTTCGGCGCAAGTGATAGTAACTCCGCGGATGAAATAATGCAAATCACGGTTGCATTCAACCACTTCGGAAGGGGATTGATTCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCATGTTGTGAACAACGACTACACCCACTGGAACATGTATGCCATTGGCGGTAGTGCACATCCTACCATCATCAGCCAGGGCAACCGATACACAGCTCCTCATTTAGTGGATCCAAAACATGATGCTAAGCAGGTGACCAAGAGGGACTATGCGATGGAGTCGGAGTGGAAGAAGTGGACATGGAGATCGGAGGGAGATCTGATGAGGAATGGAGCCTTCTTCGTTCCATCTGGGAACCCCTCCAAAAGGATGCCATACTCTAGGCTGGATATGATCAAAGCAAAGCCAGGGACCTATGTTTCAAGACTCACCCGTTTCTCCGGTGCACTTACCTGCAGGCGTGGTGGACCTTGTTAA 1332 0.4842 MAAVKSSSLLLLFFVLFAVIAPTIRAHIAEYDDYWKEREEEAKKAALEAFHPTPQEVNDHFNLHVEDELTGSNGTRRSLRVNKGPCKATNPIDRCWRCRPNWASQRKRLADCVLGFGRNTVGGKYGKYYFVTDPSDNDMVNPKKGTLRHAVIQPRPLWIVFARSMIIRLNQELIMTSDKTIDGRGVNVHIAYGAGITIQFVKNVIIHGLHIHDIVSGSGGLIRDSVNHFGYRSRSDGDGISIYGSSHVWIDHNSMSNCKDGLIDAIQGSTAITISNNHFTKHNEVMLFGASDSNSADEIMQITVAFNHFGRGLIQRMPRCRWGFFHVVNNDYTHWNMYAIGGSAHPTIISQGNRYTAPHLVDPKHDAKQVTKRDYAMESEWKKWTWRSEGDLMRNGAFFVPSGNPSKRMPYSRLDMIKAKPGTYVSRLTRFSGALTCRRGGPC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0976 443 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Vvi1g0976 443 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Vvi1g0976 443 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Vvi1g0976 443 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Vvi1g0976 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Vvi1g0976 443 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Vvi1g0976 443 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Vvi1g0976 443 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Vvi1g0976 443 Pfam Pectate lyase 174 354 IPR002022 -
Vvi1g0976 443 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570
Vvi1g0976 443 Gene3D - 89 436 IPR012334 -
Vvi1g0976 443 PANTHER PECTATE LYASE 18-RELATED 42 440 IPR045032 GO:0030570
Vvi1g0976 443 SMART amb_all 164 361 IPR002022 -
Vvi1g0976 443 SUPERFAMILY Pectin lyase-like 90 434 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0976 Vvi-Chr1 10843187 10844887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0976 1 443 Polysaccharide Lyase AT5G15110 57.023 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0976 K01728 - vvi:100262177 901.738