Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0887 ATGTCACTCTCATACTCTGACCGCTTCTCCGACCTTCTCTGCGGCGAGGACTCTAGCATCTTATCCGGCGACTTGCCGGAGTGCTCTTCAGACCTCGAATCTCCGACTGATATTGAGGAATCAATAGCTGGATTTATTGAAGATGAAAGGAACTTCGTGCCTGGATTCGATTACTTGGCCAGGTTTCGGTCACACTCGCTCGACGCCTCCGCTCGAGAGGAATCTGTTGCATGGATTCTTAAGGTGCAAGCCTACCATGGTTTCCAACCACTAACGGCGTATCTCTCCGTCAACTACTTGGACCGTTTCCTCTATTCTCGCCGTTTGCCGCAAACAAATGGGTGGCCACTGCAACTCTTATCTGTTGCTTGCTTGTCATTAGCTGCAAAGATGGAGGAACCCCTAGTTCCTTCTCTATTGGATCTCCAGGTTGAAGGTGCAAAATTTATATTTGAATCAAAAACAATTCGTAGGATGGAGCTCCTTGTACTTGGTGTTTTGGATTGGAGACTAAGATCGATAACACCTTTCAGTTTCATCGGGTTCTTTGCATACAAGCTGGATTCAAGTGGAAGTGTGATTGGATTTCTTATTTCCAGGGCCACGCAAATTATCTTGTCTAACATCCAAGAGGCGAGTTTCCTGGAGTATTGGCCGTCATGCATAGCTGCAGCAGCCATACTTTGCGCAGCCAATGAGATTCCAAAGTTGTCGCTTGTTGATCCTGAACGTGCAGAATCATGGTGTGATGGACTGAGCAAAGAGAAAATCATCAGTTGCTATCAGTTAATGCAAGAAATCACGGTTGACAATAACCGGAGGAAGCCTCCAAAACTCTTACCACAGCTTCGAGTAACAATTCGGGCCAGAGTTAGGTCGTCTGGCTCCTCATCCTCATCATCCTCATCATCCTATAAGAGGAGAAAATTAAATAACTGCTTATGGGTAGACGATGACAAGGGGAACGGCGACTAA 975 0.4636 MSLSYSDRFSDLLCGEDSSILSGDLPECSSDLESPTDIEESIAGFIEDERNFVPGFDYLARFRSHSLDASAREESVAWILKVQAYHGFQPLTAYLSVNYLDRFLYSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKFIFESKTIRRMELLVLGVLDWRLRSITPFSFIGFFAYKLDSSGSVIGFLISRATQIILSNIQEASFLEYWPSCIAAAAILCAANEIPKLSLVDPERAESWCDGLSKEKIISCYQLMQEITVDNNRRKPPKLLPQLRVTIRARVRSSGSSSSSSSSSYKRRKLNNCLWVDDDKGNGD* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0887 324 Pfam Cyclin, N-terminal domain 44 171 IPR006671 -
Vvi1g0887 324 SMART cyclin_7 77 165 IPR013763 -
Vvi1g0887 324 SUPERFAMILY Cyclin-like 36 171 IPR036915 -
Vvi1g0887 324 PANTHER CYCLINS 46 272 IPR039361 -
Vvi1g0887 324 SUPERFAMILY Cyclin-like 156 269 IPR036915 -
Vvi1g0887 324 Gene3D - 55 172 - -
Vvi1g0887 324 Pfam Cyclin, C-terminal domain 174 275 IPR004367 -
Vvi1g0887 324 FunFam D2/4-type cyclin 55 170 - -
Vvi1g0887 324 CDD CYCLIN_AtCycD-like_rpt1 71 169 - -
Vvi1g0887 324 ProSitePatterns Cyclins signature. 72 103 IPR006671 -
Vvi1g0887 324 SMART Cyclin_C_2 174 305 IPR004367 -
Vvi1g0887 324 CDD CYCLIN_AtCycD-like_rpt2 174 264 - -
Vvi1g0887 324 Gene3D - 46 236 - -
Vvi1g0887 324 FunFam D6-type cyclin 171 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0887 Vvi-Chr1 9503596 9505790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0887 1 324 Core Cell Cycle Gene Families AT1G70210 65.361 3.13e-147 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0887 K18810 - vvi:100255261 625.55