Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0330 ATGAGAATAGCCATGTCTACTTTGAGCAAGAGTGCAAGCAGTTCAAGTGAAGAAGATGCTGAGCTCAGAAGGGGGCCATGGACTCTTGAAGAAGACACTCTTCTCATTCACTACATTGCTTCTCATGGCGAAGGCCGTTGGAATTTGCTAGCAAAGTGTTCAGGACTGAGGAGAACTGGCAAGAGTTGCAGATTGAGATGGTTGAATTATCTGAAACCAGATGTCAAGCGCGGAAATCTCACTCCACAAGAACAGCTCTTGATTCTTGAACTCCATTCCAAGTGGGGCAACAGGTGGTCCAAGATTGCACAACACTTGCCTGGAAGGACAGATAATGAAATAAAGAACTACTGGAGAACTCGGGTTCAGAAACAAGCAAGGCATCTTAAGATTGATTCCAACAGCAGGGCATTCCAAGATGTGATTCGGTGTGTGTGGATGCCAAGGTTGCTTCAAAAGATAGAAGGGTCATCCTCTACGTCATCCACAACATCCCAAGTGTCCATAATTCCTCAATCTCTCAACCATGCCGATTCTCAGCAGCATTCAGCAGCAGCACCACCACCAGTAGTAGCACAAGCTCCTGTGCAAGGGCCCCTCAGTATAAACGAAACAATCAACAATTTGGAACATAATGAGAAGAATTCAAGCTCAGAGAACTGCACCAGCCCAAGTATATGCTCTTCGGAATCCATGAACATCTCACAAATCTCTCAAATTCCAGACTACCCAACAAGTCCTTTTCAGGCCATGAGCAACAGTGACGATTACAGCACACTCCTGAAGGGTTATTATAATGTCGACAACAGTAACTATGAGATGGAAACCTTCAACTTGGCATCCATGTCAGCGCCACAGGGGGACTTCGAAAATCCAGTTGGGGACTGCCCCATGGTGGAAAGCAATTGGGTGGATAGTGATTTGGCAGATAGCCTATGGAACATGGATGAATTGTGGCAGTTTTGGAAGCTACAAGAGGGGGCACCTAGGCTCTTTTAA 999 0.4595 MRIAMSTLSKSASSSSEEDAELRRGPWTLEEDTLLIHYIASHGEGRWNLLAKCSGLRRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDSNSRAFQDVIRCVWMPRLLQKIEGSSSTSSTTSQVSIIPQSLNHADSQQHSAAAPPPVVAQAPVQGPLSINETINNLEHNEKNSSSENCTSPSICSSESMNISQISQIPDYPTSPFQAMSNSDDYSTLLKGYYNVDNSNYEMETFNLASMSAPQGDFENPVGDCPMVESNWVDSDLADSLWNMDELWQFWKLQEGAPRLF* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0330 332 MobiDBLite consensus disorder prediction 1 15 - -
Vvi17g0330 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Vvi17g0330 332 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Vvi17g0330 332 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Vvi17g0330 332 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 216 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vvi17g0330 332 FunFam MYB transcription factor 81 144 - -
Vvi17g0330 332 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Vvi17g0330 332 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Vvi17g0330 332 Gene3D - 80 122 - -
Vvi17g0330 332 CDD SANT 81 120 IPR001005 -
Vvi17g0330 332 Gene3D - 23 76 - -
Vvi17g0330 332 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Vvi17g0330 332 CDD SANT 26 71 IPR001005 -
Vvi17g0330 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Vvi17g0330 332 MobiDBLite consensus disorder prediction 175 194 - -
Vvi17g0330 332 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g0330 332 SMART sant 76 124 IPR001005 -
Vvi17g0330 332 SMART sant 23 73 IPR001005 -
Vvi17g0330 332 FunFam Myb transcription factor 24 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0330 Vvi-Chr17 3454188 3455622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0330 19 321 MYB Transcription Factor Family AT1G68320 45.625 5.60e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0330 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0330 K09422 - vvi:100242243 645.58