Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0865 ATGGGCAGAGCACCTTGTTGTTCTAAGGTTGGTTTGCATAGAGGTTCATGGACTGCCAGAGAAGACACATTGCTGACCAAGTATATTCAGGCTCATGGTGAAGGCCACTGGAGATCTCTCCCCAAGAAAGCTGGTCTTTTGAGATGTGGGAAGAGTTGCAGGCTGAGATGGATGAATTATCTAAGGCCGGATATCAAAAGAGGAAACATCACGCCGGACGAAGACGACCTAATTATCAGACTGCATTCACTTTTGGGAAATCGGTGGTCTCTCATCGCAGGTAGGCTTCCAGGTCGAACCGATAATGAGATCAAGAACTACTGGAACACCCATCTGAGTAAGAAGCTAAGAAGTCAAGGAACAGACCCCAATACCCACAAGAAAATGACAGAGCCTCCTGAGCCCAAGAGGAGGAAGAACACAAGAACAAGAACCAACAATGGCGGAGGCAGCAAGAGGGTCAAGATCAGCAAGGACGAAGAAAATTCCAATCACAAAGTCCATCTCCCCAAACCGGTTAGAGTCACCTCCTTAATCTCCATGTCGAGGAACAACAGCTTTGAATCTAATACAGTCAGCGGGGGCTCGGGCTCGAGTTCAGGAGGAAATGGAGAATCGCTTCCATGGCCTAGTTTCAGAGACATCCGGGACGACAAGGTTATTGGGGTTGACGGGGTTGACTTCTTCATCGGAGATGATCAAGGTCAAGACCTGGTCGCCAGCTCCGATCCAGAATCACAATCCCACATGCCACCAACTGACAACTCTCTGGACAAACTGTATGAAGAGTATCTGCAACTGCTTGAGCGAGAAGACACTCAAGTTCAGCTTGACTCCTTCGCCGAATCACTACTCATTTAA 861 0.4832 MGRAPCCSKVGLHRGSWTAREDTLLTKYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRSQGTDPNTHKKMTEPPEPKRRKNTRTRTNNGGGSKRVKISKDEENSNHKVHLPKPVRVTSLISMSRNNSFESNTVSGGSGSSSGGNGESLPWPSFRDIRDDKVIGVDGVDFFIGDDQGQDLVASSDPESQSHMPPTDNSLDKLYEEYLQLLEREDTQVQLDSFAESLLI* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0865 286 MobiDBLite consensus disorder prediction 234 255 - -
Vvi15g0865 286 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 185 - -
Vvi15g0865 286 FunFam Myb transcription factor 11 67 - -
Vvi15g0865 286 CDD SANT 16 61 IPR001005 -
Vvi15g0865 286 SMART sant 66 114 IPR001005 -
Vvi15g0865 286 SMART sant 13 63 IPR001005 -
Vvi15g0865 286 Gene3D - 71 148 - -
Vvi15g0865 286 MobiDBLite consensus disorder prediction 239 254 - -
Vvi15g0865 286 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi15g0865 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi15g0865 286 MobiDBLite consensus disorder prediction 111 211 - -
Vvi15g0865 286 MobiDBLite consensus disorder prediction 177 206 - -
Vvi15g0865 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi15g0865 286 MobiDBLite consensus disorder prediction 120 141 - -
Vvi15g0865 286 Gene3D - 14 66 - -
Vvi15g0865 286 CDD SANT 71 112 IPR001005 -
Vvi15g0865 286 FunFam Transcription repressor MYB5 71 154 - -
Vvi15g0865 286 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi15g0865 286 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi15g0865 286 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi15g0865 286 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi15g0865 286 MobiDBLite consensus disorder prediction 153 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0865 Vvi-Chr15 17211905 17212852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0865 1 131 MYB Transcription Factor Family AT4G09460 71.756 2.77e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi15g0865 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0865 K09422 - vvi:100232899 532.717