Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0219 ATGGAAGGGAATTCCCCAGCAAGAATTGACTTACGAAGTAAGAAGGAAACTTCATACTGGGGATTCGAAATGAATATTCTACTTGTGAATTTATATTTATTTAAGCTTAGAAGAATCTCCTTTAAGGCACTAATTGCTTGCTGGTTGCTAAGAGCAGAAATGCCCTCCCCACTGAATTCTCCAACACCATGTTTCATCTACTTTTCACTTACCTCCATTCTTTTAATTGTCTGCCATCTTGGATACATCACCGGCACAGCAGTAGATGACAACTCCACCATCATTGGGGCAATCATTGATGCTAATTCTCGTAAAGGTAAAGAGGAAATAACCGCCATCAAGATAGCTGTGGATAAGTTCAATAACAATTCCAAGAATCATAAGCTCTCTCTTATCTCCCGGAACTTCACCGGAGAACTCTATGGGGCAGCCTTAACAGCTGAAGAACTGATTAAAGAGAAGAAAGTGCAAGTGATTGTGGGCATGGATACATGGCAGCAAGCAGCTTTAGCTGCTGAAATCGGAAACCAAGCTCAAGTACCAGTTCTTTCATTGGCGGCAGCCGCGAGTGTCCGGCCATCGAGGCAGCTTGGAAGGTCCACCCTGATACAAATGGGCACCAATGTTTCTGAACAAATAAGGTGCATTGCAGCTATCGTTCACTCCTATCACTGGCGAAGAGTCATCGCAATCTATGAAGATGATGCGTACGGTGGGAACGCTGAGATGTTAACTATTTTATCTGAAGCTCTTCAAAGAGTTGGCTCGGAGATTGAGTACCATTTGCCTCTTCCTCCCATATCATCTCTATCTGATCCAAGAGGAGCTGTCCATCAAGAGCTCTTGAAGCTTCTGAGCACACAATCCAGGGTTTTCATTGTTCTTCAATCGTCTTTACCAATGGCTACCCAATTGTTCCAAGAAGCAAGGCGGATGGATTTTATGGGGAAAGACTCAGCCTGGATAATTACAGATAGCATTTCAAGCTTCCTGGATTCCATGGACACCTCCGTTATCTCCTATATGGAAGGGGCTCTAGGAATCAAGTCCTACTATTCCCAATCCAAATCCAATAGGCCCTTCCAAGAATTCTCTGCCCAGTTTCAGAAAAATTTTAAATCTGAATACCCAGAGGAAGACAACGCCCAGCCAGGAATTCATGCACTACGAGCATATGATAGCATTGCTGTCATCACACGGGCCCTAGAGAGATTAGCTAGTGATGATACTAATACTCCAAAAATGTTGTTAAAAAATATATTATCAAGCAACTTCAGTGGTTTAAGTGGCAATATTATTTTTGAAGGGGGTGATCTATCAAATTCAAATTCGTTGCCGTTCAGGATTATAAACGTTGTTAGAACGAACTACAAGGAGCTTGACTGTTGGACGCAGGACTTGGACAACCCTCTCAACAGAGAAGGTGGAGACAAAAATTGCGGTAGAAACACCACGAAGGTTTTGGATGGTCCAGTGATTTGGCCAGGGTACCTAAAACGTGTCCCCAAGGGATGGGAAATGCCCACTGTTGCAAAACCATTGAAGATTGGAATTCCAGCTAACACCACTTTTAAAAATTATGTGAAGGTGGACGTAGATCAAATCGAGCCTGAAAAAAAATATACTGGTTTCTGTATTGATATTTTCCACGAGGTGTTAAAAATTTTGGAGCAAAATTACTCTCTACCCTACGAGTTCCATCCAGTTGTTGGCACATACGATGAGCTGGTTGATTGTGTTTACAACAAGACCTATGATGCTGTGGTTGGGGATGTGACAATACTTGCCACCCGTTCAAAAAAAGTGGAATTCACAGTGCCATATGCTGAGTCGGGATTGGTGATAGTACAAGTAACGTCTGAAGAACCTCACAAGGCATGGATGTTCCTGAAGACTTTCACCTGGGAAACGTGGGTAGTCACAGGTGCCCTCTTGATCTACACCATGTTCATAGTTTGGGTACTGGAGTACCAATCCAATAATCCGGCATTCAGAGGCCCATGGAGGAGTCAGCTTGGGACTGCTCTTTGGTTCACCTTCTCTTCTCTTTTCTTTGCTCATAGGGAGACAATTCGTAGCAATATTACTCGAGTAGTGATAGTGGTGTGGCTGTTTGTAGTCTTCGTTTTAACCTCGAGCTACACTGCTAGTCTCTCTTCCATGCTCACTGTCCAACGACTTGATTCCAATGTGATGGATATCGAATGGCTAAAAGCTACTAGGTCTGTGGTTGGTTGTAATGGTGCTTCATTTGTGAGGCAATACTTAGAGAACGTGTTTAATTTCGAAGGAGCTCATATCAAGAATATTTGCAACCAAAACCAATATCATGGCGAATTCCAGAGTGGGAACATCTCAGCTGCCGTTCTTGGCCTTCCTCATGCAAAAATTCTCACTAGTCAGTTCTGCAAGAATTACACTGCCGGTCAACCCCTCAACAGATTCGGAGGATTAGGCTTTGCCTTTCAGAAAGGCTCTCCACTAGCTACTGACGTCTCTGAAGCCATCCTAACCATATCTGAGAAGAGGATTCTAAAAGAATTAGAAGATAAATGGTTTCCTCGTTCTGCCGAGTGTTCAGCCACCACAAATGATGAACTGAGCCTCGGGAACTTCTGGGCTCTCTACCTTTTATGCGGCGCCACTTCCACTCTCTGCTTTCTACTGTTCTTCCTTCGCCTGCTCATCGATTTCAAACGTCACCAGGCATCCAGAAGTGATGCAAACCCAAGTGATGAAAGTGTCTGGATGAAGACTGTTCAATTAGTGCATTTCTTTCATAATGGACAAACTGAGTTTCCTAATGAAAGACTGTCAAATTTGTCTCCCCATCCCACTGGAGATGAATGGATCTCTACAAGGTGGCCAACAGTGAGCCGTTTTGATACCCACGGAGCCTCCGGACGTCTTTCCAGCTACAGTGACTATGAACTCAAGGTGACCTCTTCTGATGTGCTGGAGCCTCCTGAGACCTGTCCCCCTACTATAGCATTTCAAGCTTCCTGGATTCCATGGACACTTCCTTTATCCCCTATATGGAAGGGGCTCTAG 3051 0.4402 MEGNSPARIDLRSKKETSYWGFEMNILLVNLYLFKLRRISFKALIACWLLRAEMPSPLNSPTPCFIYFSLTSILLIVCHLGYITGTAVDDNSTIIGAIIDANSRKGKEEITAIKIAVDKFNNNSKNHKLSLISRNFTGELYGAALTAEELIKEKKVQVIVGMDTWQQAALAAEIGNQAQVPVLSLAAAASVRPSRQLGRSTLIQMGTNVSEQIRCIAAIVHSYHWRRVIAIYEDDAYGGNAEMLTILSEALQRVGSEIEYHLPLPPISSLSDPRGAVHQELLKLLSTQSRVFIVLQSSLPMATQLFQEARRMDFMGKDSAWIITDSISSFLDSMDTSVISYMEGALGIKSYYSQSKSNRPFQEFSAQFQKNFKSEYPEEDNAQPGIHALRAYDSIAVITRALERLASDDTNTPKMLLKNILSSNFSGLSGNIIFEGGDLSNSNSLPFRIINVVRTNYKELDCWTQDLDNPLNREGGDKNCGRNTTKVLDGPVIWPGYLKRVPKGWEMPTVAKPLKIGIPANTTFKNYVKVDVDQIEPEKKYTGFCIDIFHEVLKILEQNYSLPYEFHPVVGTYDELVDCVYNKTYDAVVGDVTILATRSKKVEFTVPYAESGLVIVQVTSEEPHKAWMFLKTFTWETWVVTGALLIYTMFIVWVLEYQSNNPAFRGPWRSQLGTALWFTFSSLFFAHRETIRSNITRVVIVVWLFVVFVLTSSYTASLSSMLTVQRLDSNVMDIEWLKATRSVVGCNGASFVRQYLENVFNFEGAHIKNICNQNQYHGEFQSGNISAAVLGLPHAKILTSQFCKNYTAGQPLNRFGGLGFAFQKGSPLATDVSEAILTISEKRILKELEDKWFPRSAECSATTNDELSLGNFWALYLLCGATSTLCFLLFFLRLLIDFKRHQASRSDANPSDESVWMKTVQLVHFFHNGQTEFPNERLSNLSPHPTGDEWISTRWPTVSRFDTHGASGRLSSYSDYELKVTSSDVLEPPETCPPTIAFQASWIPWTLPLSPIWKGL* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0219 1016 SMART GluR_14 515 855 IPR001320 GO:0015276|GO:0016020
Vvi10g0219 1016 CDD PBP1_GABAb_receptor_plant 95 467 IPR044440 -
Vvi10g0219 1016 SUPERFAMILY Periplasmic binding protein-like I 94 505 IPR028082 -
Vvi10g0219 1016 Gene3D - 765 861 - -
Vvi10g0219 1016 Gene3D - 405 512 - -
Vvi10g0219 1016 Gene3D - 212 383 - -
Vvi10g0219 1016 Pfam Ligand-gated ion channel 855 881 IPR001320 GO:0015276|GO:0016020
Vvi10g0219 1016 SUPERFAMILY Periplasmic binding protein-like II 492 855 - -
Vvi10g0219 1016 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 95 908 IPR015683 -
Vvi10g0219 1016 FunFam Glutamate receptor 626 765 - -
Vvi10g0219 1016 FunFam Glutamate receptor 765 859 - -
Vvi10g0219 1016 Pfam Receptor family ligand binding region 111 438 IPR001828 -
Vvi10g0219 1016 FunFam Glutamate receptor 509 626 - -
Vvi10g0219 1016 Pfam Bacterial extracellular solute-binding proteins, family 3 536 854 IPR001638 -
Vvi10g0219 1016 Gene3D - 90 211 - -
Vvi10g0219 1016 CDD GluR_Plant 512 853 - -
Vvi10g0219 1016 FunFam Glutamate receptor 212 382 - -
Vvi10g0219 1016 Gene3D - 513 625 - -
Vvi10g0219 1016 PIRSF IGluLR_plant 64 942 IPR017103 -
Vvi10g0219 1016 Gene3D - 626 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0219 Vvi-Chr10 1992263 1998191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0219 65 992 Ion Channels AT2G29120 32.143 1.62e-136 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0219 - - vvi:100245259 1907.11