Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0316 ATGGGAAGAAGACCATGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGATGAAACCCTCTCCAAATATGTTGCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGTGATGTCTGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGCTGAACTATCTCAAGCCTGGTATAAAAAGAGGTGACATATCAGTGGATGAAGAAGATATGATTATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAATCTGTCAAAGAAGTTACAGAAACATGGTACACCATCATTATCTGTTTCTTCACCTCAAAACAAACGTCATGAAGAAGAGAAGATCAAGCAAGTTCATGTAGCACCGGAAGCTCCACGCCCTAGGAGAATCAGTGCAGTTGAATACAGTAAAATTGTGGAAAATAATAGGTGTAGTACTACTCCGAGTCCCTCAAATAAAGTGGAGGGTAGTAGTGATGAAGCTTCTTTCAGTGATTTCCTGATCGATATTGATCAAAGCCAGTTGTTGATTGGTGATGATTCAAACTCAAAGGTCCCACAAATGGAGGAAGAGCACATCAACAAACAGGTAGGCTTAACCAACAGTCCTAGCTCATCATCACCTTCTGATCATTGTCACCATCTCTTGGCAGAGAAATTTGACCCTCTGGAGACCCTCTTGGATGTTGAACTCAAGAGAATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 813 0.4231 MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAVMSAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKHGTPSLSVSSPQNKRHEEEKIKQVHVAPEAPRPRRISAVEYSKIVENNRCSTTPSPSNKVEGSSDEASFSDFLIDIDQSQLLIGDDSNSKVPQMEEEHINKQVGLTNSPSSSSPSDHCHHLLAEKFDPLETLLDVELKRMASFLGLEND* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0316 270 Pfam Myb-like DNA-binding domain 13 64 IPR001005 -
Vra9g0316 270 Pfam Myb-like DNA-binding domain 71 115 IPR001005 -
Vra9g0316 270 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 266 - -
Vra9g0316 270 SMART sant 69 117 IPR001005 -
Vra9g0316 270 SMART sant 12 66 IPR001005 -
Vra9g0316 270 ProSiteProfiles Myb-like domain profile. 8 64 IPR001005 -
Vra9g0316 270 PANTHER MYB TRANSCRIPTION FACTOR 1 266 - -
Vra9g0316 270 MobiDBLite consensus disorder prediction 133 150 - -
Vra9g0316 270 Gene3D - 73 146 - -
Vra9g0316 270 Gene3D - 7 70 - -
Vra9g0316 270 MobiDBLite consensus disorder prediction 121 151 - -
Vra9g0316 270 SUPERFAMILY Homeodomain-like 11 111 IPR009057 -
Vra9g0316 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Vra9g0316 270 CDD SANT 15 64 IPR001005 -
Vra9g0316 270 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vra9g0316 270 CDD SANT 74 115 IPR001005 -
Vra9g0316 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0316 Vra-Chr9 2535511 2537205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0316 1 163 MYB Transcription Factor Family AT4G09460 53.049 5.96e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra9g0316 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0316 K09422 - gmx:547568 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0316 9 2535511 2537205 Vra9g0316 9 2535511 2537205 ECH