Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2144 ATGGATTCTCATGGCACTTCCCATGGCCATCAACACAGGGAGCATGAAGGCCACCGTGAGGCGGTTTTCTTACATGGTGACTTGGATCTGTTGATAATTGAAGCCAAGTCTCTTCCAAATTTAGATTTATCTTCTGAAGCAGTTAGAAAATGTGTGACTTTGGGCAACGTGTGCCAGCCTCCATTTATGAAAGGACTAAAGTCACACGGTGGAAAAGATAAGATGATAACAAGTGACCCTTATGTTTCAGTATGCATAGCTGGGGCAACCGTTGCTCGAACTAGAGTGATTCCTAACTGTGAGAACCCTTGCTGGGATGAGCAATTTATTGTGCCTGTTGCTCATCCTGCTCATAAAGTGGAGTTTCTTGTGAAGGATAATGATATTCTGGGGGCTGAACTCATTGGAGTGGTGGAGATACCTGTTTACAAGATAATTTCTGGTAATGCTATCAATGATTGGTTTCCCATCATTGGTCAGTATGGAAGCTGCTTAAAACCTTATCCTGAACTGCATCTTTCTGTTCAATATAAGCCAATTGCAGTGAACCGTACACAAAAAGTAATGAATGAGGATGGGACAGCATATTTAGGTGTTTCTAAAACCTATTTCCCTCTCAGGAAAGGAGGGAGTGTGACTCTGTATCAAGATGCACATATACCAGATGGTATGATACCTGAAATCCCACTTGAGGGTGGAAAAGTGTTTCGGCAAAATAAATGTTGGGAAGACATATGTCATGCAATTTTGGAAGCTCATCACATGATATACATTATAGGATGGTCAGTTTACCACCCAGTTAGGCTTATCAGAGAGGCAACAAAGCCAGTACCTTCAGGGGGAGAGCTTTCACTTGGAGAGCTATTGAAGTACAAGTCACAAGAAGGACTCCGAGTGGTTGTGCTGATTTGGGACGACAGAACTTCACATGACAAGTTTCTTCTGAAAACAGATGGTGTCATGCAGACTCATGATGAGGAAACTAAGAAGTTTTTCAAACATTCCACTGTTCATTGTGTGCTATCTCCACGTTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGCGTGGAGTTGTTGCATTGAATCTAGTAGTGTTGTGGGAACCCTCTTCACACATCACCAGAAATGTGTGCTTGTAGACAGTCTTGGTTCCGGGAATAATCGGAAAATAACTGCTTTTATTGGTGGTTTGGATCTATGTGATGGTAGATATGATACCCCTGAGCATCGGCTTTTTCGTGATATAGATACGGTTTTTCATAATGATTTTCACAACCCTTCTTTTCAACAACTAAGTTCGCATTCGTGTGCTCCAAGGCAACCATGGCATGACTTACATTGTAAAATTGAAGGTCCAGCAGCATATGATATATTAACTAATTTTGAACAAAGATGGAGGAAGGCCAAAAAATGGCGTGACTTCAGGCTCAAAAAGGTGACAAACTGGCATGATGATGCTTTGCTTCGGCTGGATCGAATTTCATGGATTGTCAAACCTGCTCCTAGCCCCAATGGTGAAAAAGCTGTATATGTAACCGATGAAAATGATCCTGAAAGTTGGAACGTGCAGGTGTTTAGGTCCATAGATTCTGGATCTGTAAAGGGCTTTCCAAAGGATGTTTTCAAAGCTAAGGCTCAGAATCTTTTCTGTGGAAAAAATTTGAAAGTTGATCAAAGCATCCATACTGCTTATGTAAGAGCAATAAGATCTGCCGAGCACTTTATATATATTGAGAATCAGTATTTTCTGGGCTCCTCATTTCACTGGCCTTCATATAAAAATAAAGCTGGTGCAAACCACTTGGTTCCCATGGAGTTGGCTTTGAAAATTGCTGGTAAGATCAGTGTAAATGAACGTTTTTCTGTATATATAGTTATACCAATGTGGCCAGAGGGTGTTCCAACAAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAAGATTATTGCTGATGCCCTTGCAAAAGCAGGTCTCTCTGATAAGTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAGAGAGAACCCCCAAGCTCAAATGTTTCTCCAACGTCAAGTCCATCTGATAACCGCGCTTTGGTAGCAGTTAAAAAATTCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGACGATTACGTGATTATTGGATCGGCAAATATTAACCAGAGATCATTAGATGGTTCTAGGGACACAGAAATAGCTATGGGAGCTTATCAACCAAAATATACATGGACAGAAAGTAGACCCCATCCACGTGGCCAGGTGTATGGATACAGAATGTCACTGTGGGCTGAGCACCTTGGTAGCCTTGACCATGTTTTTGGTGAACCTCAGACCCTGGAATGTGTTAGACAAGTGAACAAAATTGCAAAACAAAACTGGGGCATATATGTGTCCGAAGAAGGGAGATACATGAGGGGACATTTGATGCAGTATCCCGTTAAGATCAGCAGGGATGGAAAAGTGAGTGCATTAGATGATTATGAGTCTTTTCCTGATGTTGGTGGCAAAGTTCTTGGATCACCAAACTCACTTCCGGATCAACTAACCACCTGA 2607 0.4139 MDSHGTSHGHQHREHEGHREAVFLHGDLDLLIIEAKSLPNLDLSSEAVRKCVTLGNVCQPPFMKGLKSHGGKDKMITSDPYVSVCIAGATVARTRVIPNCENPCWDEQFIVPVAHPAHKVEFLVKDNDILGAELIGVVEIPVYKIISGNAINDWFPIIGQYGSCLKPYPELHLSVQYKPIAVNRTQKVMNEDGTAYLGVSKTYFPLRKGGSVTLYQDAHIPDGMIPEIPLEGGKVFRQNKCWEDICHAILEAHHMIYIIGWSVYHPVRLIREATKPVPSGGELSLGELLKYKSQEGLRVVVLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQAWSCCIESSSVVGTLFTHHQKCVLVDSLGSGNNRKITAFIGGLDLCDGRYDTPEHRLFRDIDTVFHNDFHNPSFQQLSSHSCAPRQPWHDLHCKIEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLRLDRISWIVKPAPSPNGEKAVYVTDENDPESWNVQVFRSIDSGSVKGFPKDVFKAKAQNLFCGKNLKVDQSIHTAYVRAIRSAEHFIYIENQYFLGSSFHWPSYKNKAGANHLVPMELALKIAGKISVNERFSVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIIADALAKAGLSDKYHPQDYLNFYCLGKREPPSSNVSPTSSPSDNRALVAVKKFRRFMIYVHAKGMIVDDDYVIIGSANINQRSLDGSRDTEIAMGAYQPKYTWTESRPHPRGQVYGYRMSLWAEHLGSLDHVFGEPQTLECVRQVNKIAKQNWGIYVSEEGRYMRGHLMQYPVKISRDGKVSALDDYESFPDVGGKVLGSPNSLPDQLTT* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2144 868 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 24 179 IPR035892 -
Vra7g2144 868 Pfam C2 domain 26 157 IPR000008 -
Vra7g2144 868 Gene3D Endonuclease Chain A 232 489 - -
Vra7g2144 868 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 714 741 IPR001736 GO:0003824
Vra7g2144 868 SMART pld_4 714 741 IPR001736 GO:0003824
Vra7g2144 868 SMART pld_4 370 405 IPR001736 GO:0003824
Vra7g2144 868 CDD C2_plant_PLD 21 177 - -
Vra7g2144 868 Gene3D C2 domain 22 178 IPR035892 -
Vra7g2144 868 ProSiteProfiles C2 domain profile. 3 155 IPR000008 -
Vra7g2144 868 SUPERFAMILY Phospholipase D/nuclease 548 785 - -
Vra7g2144 868 PIRSF PLD_plant 13 868 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vra7g2144 868 Pfam Phospholipase D Active site motif 371 405 IPR001736 GO:0003824
Vra7g2144 868 Pfam Phospholipase D Active site motif 715 741 IPR001736 GO:0003824
Vra7g2144 868 Pfam Phospholipase D C terminal 788 858 IPR024632 -
Vra7g2144 868 PANTHER PHOSPHOLIPASE D 20 868 IPR015679 -
Vra7g2144 868 SUPERFAMILY Phospholipase D/nuclease 202 475 - -
Vra7g2144 868 PANTHER PHOSPHOLIPASE D 20 868 - -
Vra7g2144 868 SMART C2_3c 27 154 IPR000008 -
Vra7g2144 868 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 370 405 IPR001736 GO:0003824
Vra7g2144 868 Gene3D Endonuclease Chain A 532 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2144 Vra-Chr7 41145947 41154470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2144 17 867 Phospholipase D Gene Family (Wang group) AT4G11850 53.434 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2144 K01115 - gmx:100779740 1570.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2144 7 41145947 41154470 Vra7g2144 7 41145947 41154470 ECH