Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1804 ATGGACGCCGAAGATGACGAAGCTTCACTCCAACCACACTCTGATGCACAATGCCACACCGACATGCAAAATGTCCCCTACGCTGCCGCGGAAGTCCCTGAGCCCGATACCGTAGGGGAGCTGAGCGCAGCCGCCGCCGTCCATGAGGTCGCCGCTGTTGAGCCCGATGCGACGATGGAGGATGTAGTTGCGTACGACGAGGGCGTCGGAGCGCAAGTGATGGACGAGGTAATTGAGGAGAAGGGGGATGAGGTCACCGATTTGGACGACGTGGCTTTGGAGATGGAAAACGTCGAAGAGGAAGCGAATTTGGCAATTGATGCGGAAGAGGACGAAATTGGGGACGAAGACGCGAACGGAGACGCTTTGATGGAAGAAGAAGAAGAACGGCAACAAGGAGAGGAGGAGGATGAGGAGGGGGAGGGCGAGGGGGAGGAGGAAGAAAAACAGCAACAAGGAGTGGAGGAGGAAGAAGAGGAACAGCAACAGGGTGAGGAGGAGGAGGAGGAAGAGGAAGAAGAACAACAACAAGGGGAAGAAGCAGAAGAAGATGCTGATGCTGGAATGGCAAAAACAGACGATACAGAGGAGAAGGAGGAGAAGAGTTTGAGTGGTGGGAAGAGGAAGCGTGGGGCTGGGAAGAATGCTAAGACTACAGGGAGAGTTGCGTCCAGGAAAAAGACGGAAGAGGATGTTTGTTTCATTTGCTTTGATGGAGGTGACCTTGTGCTTTGTGACCGCAGGGGATGTCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGACGAGGCATTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCAAACTATATGTGCTATACATGTACTTTTTCTCTGTGCAAGGGATGCATCAAAGATGCTGTTATTTTATGTGTCAGGGGAAACAAGGGATTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGTGCAGGGAAGCAATGTGGGACAAGTAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAGCTATCTCTAACATTTGATGAAATCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAGGAGGAATCACCTGATGAACTTTTTGATGGCACTAATGATAAAGGATCAGATTCTGATAGCTCCTATGAAAATGATTCGAATCGCCCTAAAAGAAGAAAGGCAAAGAAACGGGGTAAGCCCCGTTCCAAAGAAGGAAATTCGAATGGTGCAGTGACAGTGTCTGGTGCTGATGGGCCATCCGGAGATGACAGCTCTGAGTGGGCTTCAAAAGAGCTTCTGGAGTTTGTTATGCACATGAGAAATGGAGACAAATCTGTTTTATCTCAGTTTGATGTGCAGGCTCTTTTGCTTGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATATGTGATGTGAGACTTCAAAATCTTTTTGGTAAACCAAGAGTGGGACATTTCGAGATGTTAAAGCTTCTTGAGTCCCATTTCCTTCTAAAAGAGGATTCCCAGGCCGAAGATCTGCAGGGAAGTGTTGTTGACACCGAAGTTAGTCATTTGGAAGGAGACGGGAATCCCAATTCATATACGAAAGCTGGCAAAGATAAGAGGCGTAAAAATCGCAAAAAGGGTGATGACAGAGGACTTCAAACTAATGTTGATGATTATGCAGCTATTGATAACCATAATATTAATTTAATCTATCTACGACGAAATTTGGTTGAAGATCTACTTGAAGATACAGAGAAGTTTCATGATAAAGTTGTTGGTGCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTATATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATACGTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCTATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAACGTCTCCGCCAAAGCATTAAGTGTGGTCTCATAAATCGGCTAACTGTGGGTGACATACAGGACAAGGCACTGGTGCTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGTTGAGTCATCTCCGGGATAGAGCCAGTGAGAAAGGACGCCGGAAAGAGCTCAGAGAATGTGTCGAGAAACTGCAGCTTTTGAAGACACCTGAAGAACGTCAACGTAGGTTGGAGGAAATTCCAGAGATACACGTGGATCCAAACATGGATCCCAGTTATGAATCTGAAGAAGACGAAGATGAAATGGACGATAAAAGACGAGAAAACTACATGAGACCTAGAGGGTCTGCTTCCTTTGGAAGGAGGGGGAAAGATATTGCATCTCCTAGAAGTGTTTCTATTTCAAATGAATCTTGGAGTGGAACAAGGAATTATTCAAATACGAATCAGGAACTTGGCAGAAATTTGGCCAATAAAGGTTTTTCAATCAAAGGTGAAAATGCTTCTAATGTTAATGAGGTACTGAATGATACTCATTTGCACCAGGGAAGAGATAGAGAATTATCTAATAGCTGGGAGAGGCAAAAACTCTCTTCAAGCTTGGAAAGTGGTGCCAAAAGTACCCAGCCATTGGTAACATCTGATTCTTTCTCCACTGCTGTATTGGAAGCTTCTGCAGCACCATCGTCCGCTGGAATAACTCCTTCAGCTTTGAAAATTAATGAAACTGAAAAGATGTGGCATTACCAGGATCCTTCCGGAAAAATTCAGGGACCATTTTCTATGGTGCAGTTACGCAAATGGAGCAACACAGGATACTTTCCCGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCGTGACTGATGCTTTAGCAGGGAATTTTTCTAAAGAACTATCGATGGTGGATAAGGCTCAAAAGGTGCATGATTTACATTACCCAGCCTCGTACTCTAGGAAGTCTGCTCAGGGTATGGAAGGTCAAGCTGGAGAAAGACCAACATTTGATCAAAATAGTGGATCTTTGAATTCACATAGTACTATGGGTTCTCCGGCACAAACCCCAGGAGGAAGTTGGAGATCTAAAGATAATATGAATTCTGTAGCAAGTAGAACCTCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAACGGCTGGGGTTCTGATGCTGGTAGTAGAAATGAAACAACAAATCTTCCTTCACCTACACCTCAGACTACCCCTGGTGTGTCTAAGGGGCAGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCGTAGGAAATTCATTCCCAAGCAATCATGGAGGTTTGCAGGCCTCTTTGGTAGTGCACCCAGAGCGTGCTGTGCAAAATCCTGAAAAAGGCTCTTCACAACCCGGTATTAGTTCAGTGTCTTCAGATAATTCTAGGTTACATCCTCAACCAGCACCGGTGGCACCTGTTCTGCATTCAGGGCTTGACCTCAAAATGGCAGGTACAAATATGCAAAACCAGGTTGTGCGTAGCCACAACTCTCATGCAGAAGCTCAAGGGTGGGGTTCTGCTGGGGTTCCAAGGCCAGAACTGCAGGCTTGGGGAGGTGTATCATCCCAACCAAATCCTGCTACTATGCCTAACCAGCCAGCATCCCATGGCCCCTGGGTTGATGCTTCATCTGTGCAGAACACTGCCTCTTTTAACACTGGAAATCCATCTGCAGGTTTACCCACACCTGGGTTTCTGGGCATGAATACACCCGAGCCTTGGAGACCTCCAGCTTCAAGTAGTCAGCCAAACATCACAGCTCCTTCTCCAGCTCCACCCAATATGCCTTGGGGAATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGCGTTGTACCTGCTGCCAATATGAACGCAAACTGGATTCCTACGCAGGGGCCAGCACCAGGAAATTCAAATCCAGGATGGGCTGCCCCTAGTCAGGGTCTACCTCCAGTGAATGCAGTTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATGTGAATGCAGGATGGGTTGGGCCTGGTCAGGGTGTACCACCTGGAAATGCCAACCCTGTTTGGGTTCCACCGGCAGGGAATCCAGGCGTGTGGGGAAGTGAGCAAAATCATAATGGAGACCGGTTCCCCAACCAAGGAGATCGAGGTAGCCAAAGTAGAGATTCTGGTTATGGTGGTAAATCTTGGAACAACAGGCAATCATCATTTGGCAGAGGAGCTCCTTCCAGGCCTCCTTTTGGGGGACAACGAGGAGTCTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGAGATTCTTGTGATTTTCTACACAATTAG 4443 0.4614 MDAEDDEASLQPHSDAQCHTDMQNVPYAAAEVPEPDTVGELSAAAAVHEVAAVEPDATMEDVVAYDEGVGAQVMDEVIEEKGDEVTDLDDVALEMENVEEEANLAIDAEEDEIGDEDANGDALMEEEEERQQGEEEDEEGEGEGEEEEKQQQGVEEEEEEQQQGEEEEEEEEEEQQQGEEAEEDADAGMAKTDDTEEKEEKSLSGGKRKRGAGKNAKTTGRVASRKKTEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNANYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNVQGSNVGQVDFDDKNSWEYLFKDYYIDLKEKLSLTFDEITQAKNPWKGSDMLHSKEESPDELFDGTNDKGSDSDSSYENDSNRPKRRKAKKRGKPRSKEGNSNGAVTVSGADGPSGDDSSEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDVRLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEVSHLEGDGNPNSYTKAGKDKRRKNRKKGDDRGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGAFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDKRRENYMRPRGSASFGRRGKDIASPRSVSISNESWSGTRNYSNTNQELGRNLANKGFSIKGENASNVNEVLNDTHLHQGRDRELSNSWERQKLSSSLESGAKSTQPLVTSDSFSTAVLEASAAPSSAGITPSALKINETEKMWHYQDPSGKIQGPFSMVQLRKWSNTGYFPADLRIWRTTEKQDDSILVTDALAGNFSKELSMVDKAQKVHDLHYPASYSRKSAQGMEGQAGERPTFDQNSGSLNSHSTMGSPAQTPGGSWRSKDNMNSVASRTSPLAVEVPKNPANGWGSDAGSRNETTNLPSPTPQTTPGVSKGQAFENKWSPTPVQLPGSLVGNSFPSNHGGLQASLVVHPERAVQNPEKGSSQPGISSVSSDNSRLHPQPAPVAPVLHSGLDLKMAGTNMQNQVVRSHNSHAEAQGWGSAGVPRPELQAWGGVSSQPNPATMPNQPASHGPWVDASSVQNTASFNTGNPSAGLPTPGFLGMNTPEPWRPPASSSQPNITAPSPAPPNMPWGMGMPGNQNMNWGGVVPAANMNANWIPTQGPAPGNSNPGWAAPSQGLPPVNAVGWVGPGQGRSHVNVNAGWVGPGQGVPPGNANPVWVPPAGNPGVWGSEQNHNGDRFPNQGDRGSQSRDSGYGGKSWNNRQSSFGRGAPSRPPFGGQRGVCKYHESGHCRKGDSCDFLHN* 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1804 1480 MobiDBLite consensus disorder prediction 546 579 - -
Vra5g1804 1480 ProSiteProfiles Zinc finger C3H1-type profile. 1455 1480 IPR000571 GO:0046872
Vra5g1804 1480 ProSiteProfiles GYF domain profile. 935 989 IPR003169 GO:0005515
Vra5g1804 1480 MobiDBLite consensus disorder prediction 884 901 - -
Vra5g1804 1480 Coils Coil 147 184 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 763 782 - -
Vra5g1804 1480 Gene3D - 936 995 IPR035445 -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 1029 1070 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 1383 1456 - -
Vra5g1804 1480 Gene3D - 590 718 IPR036128 GO:0003677
Vra5g1804 1480 MobiDBLite consensus disorder prediction 820 841 - -
Vra5g1804 1480 Pfam SWIB/MDM2 domain 454 527 IPR003121 -
Vra5g1804 1480 SMART PHD_3 232 278 IPR001965 -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 1406 1446 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 1230 1271 - -
Vra5g1804 1480 CDD SWIB-MDM2_like 452 527 - -
Vra5g1804 1480 SUPERFAMILY CCCH zinc finger 1458 1480 IPR036855 GO:0046872
Vra5g1804 1480 SMART rtf1 588 698 IPR004343 GO:0003677
Vra5g1804 1480 ProSitePatterns Zinc finger PHD-type signature. 233 293 IPR019786 -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 98 222 - -
Vra5g1804 1480 SMART swib_2 461 532 IPR019835 -
Vra5g1804 1480 Pfam Plus-3 domain 593 696 IPR004343 GO:0003677
Vra5g1804 1480 CDD Bbox1 278 304 - -
Vra5g1804 1480 ProSiteProfiles Zinc finger PHD-type profile. 230 296 IPR019787 -
Vra5g1804 1480 Coils Coil 88 112 - -
Vra5g1804 1480 SMART gyf_5 936 991 IPR003169 GO:0005515
Vra5g1804 1480 CDD PHD5_NSD 232 277 - -
Vra5g1804 1480 SUPERFAMILY SWIB/MDM2 domain 451 528 IPR036885 -
Vra5g1804 1480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 324 IPR013083 -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 1016 1121 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 98 190 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 191 207 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 1152 1178 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 1 36 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 763 841 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 1155 1176 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 1085 1121 - -
Vra5g1804 1480 SUPERFAMILY Plus3-like 589 717 IPR036128 GO:0003677
Vra5g1804 1480 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 46 1480 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 871 901 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 377 449 - -
Vra5g1804 1480 Gene3D SWIB/MDM2 domain 443 537 IPR036885 -
Vra5g1804 1480 ProSiteProfiles Plus3 domain profile. 588 721 IPR004343 GO:0003677
Vra5g1804 1480 SUPERFAMILY FYVE/PHD zinc finger 228 284 IPR011011 -
Vra5g1804 1480 ProSiteProfiles SWIB/MDM2 domain profile. 446 529 IPR003121 -
Vra5g1804 1480 Coils Coil 123 143 - -
Vra5g1804 1480 SUPERFAMILY GYF domain 928 988 IPR035445 -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 379 414 - -
Vra5g1804 1480 PANTHER UNCHARACTERIZED 46 1480 - -
Vra5g1804 1480 MobiDBLite consensus disorder prediction 1230 1312 - -
Vra5g1804 1480 Pfam GYF domain 938 978 IPR003169 GO:0005515
Vra5g1804 1480 CDD GYF 935 990 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1804 Vra-Chr5 24055652 24068712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1804 230 303 PHD Transcription Factor Family AT4G14920 39.189 1.30e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vra5g1804 Plus-3 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1804 - - pvu:PHAVU_009G003300g 2402.48