Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0196 ATGAATAAAAGTTCAGCGCTGCATGCAACGTGTCCAAGCAGGGACAACAAGTTTAAGGGTGTTCGCCGTCGCAAATGGGGCAAGTGGGTGTCGGAGATTCGAGTTCCGGGAACCCAAGAGCGGCTCTGGCTGGGAACCTACGTAACGCCGGAGGCGGCGGCGGTTGCCCACGACGTCGCCGTATACTGTCTCAGGAGGCCTTCTTCGTTGGACAAACTTAACTTGCCAGACACCTTGTCTTCTTACAGTGGTCAGCTGAGGGACATGTCTCCAAGGTCTGTTCAGAAGGTGGCTTCCGATGTTGGCATGGATGTTGACGCCAGACACATTGCTGCCGGCGGAAGTTCAAGTGGGGTGGCACAAAGTCCGGAGAGTGAGAAGAAAATGGAGGAAAGGAATGGCGTTGTTGGAGCTGATGATTCTGATGAGTTTTGGTGGAATGGTTTGGAGGGTTATGATAGTGGGACTTGGAAAGGAAGTGGTGAAGATTGTGCAGATAGGGATGCCTTGAACATTTCCATTGAAGACTACCTTTAG 537 0.5196 MNKSSALHATCPSRDNKFKGVRRRKWGKWVSEIRVPGTQERLWLGTYVTPEAAAVAHDVAVYCLRRPSSLDKLNLPDTLSSYSGQLRDMSPRSVQKVASDVGMDVDARHIAAGGSSSGVAQSPESEKKMEERNGVVGADDSDEFWWNGLEGYDSGTWKGSGEDCADRDALNISIEDYL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0196 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 12 129 - -
Vra11g0196 178 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Vra11g0196 178 Gene3D AP2/ERF domain 16 77 IPR036955 GO:0003700|GO:0006355
Vra11g0196 178 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vra11g0196 178 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vra11g0196 178 MobiDBLite consensus disorder prediction 124 138 - -
Vra11g0196 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 129 - -
Vra11g0196 178 SMART rav1_2 17 82 IPR001471 GO:0003700|GO:0006355
Vra11g0196 178 CDD AP2 17 78 IPR001471 GO:0003700|GO:0006355
Vra11g0196 178 ProSiteProfiles AP2/ERF domain profile. 17 76 IPR001471 GO:0003700|GO:0006355
Vra11g0196 178 SUPERFAMILY DNA-binding domain 17 70 IPR016177 GO:0003677
Vra11g0196 178 MobiDBLite consensus disorder prediction 112 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0196 Vra-Chr11 1305181 1306422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0196 16 133 AP2-EREBP Transcription Factor Family AT1G71520 57.025 2.01e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra11g0196 AP2 3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0196 - - gmx:100816257 232.646