Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03781 ATGGATCCTAGGAAACCCTTCATTGCAGGTGATGATATCATGGAGCTGCAATGGCAAAACGGTCGAGTTGTCACACAGAATCAAAACCACCGTAATGTCAACCAACCACAGCCGGTGAGAAACTCCGACGACTCCACTCGCGGCGGAAGTACTTCATTGCCGAGGGAGAATCAATATCTCTTCATGCATGAAGGAGAAATGGCTTCGGTGCAGCATTATGCTAACGCTACCATGCAAGGTCCACCAATGAGGTCTGAGCCGGTGCCTCCGAACTTCGCATTCTTTGCTAGGCAAGGCGTTAGAGCTGAACCAGAACCCGCTGAACCAGAACCAGCTGAACCAGAACCAGCTGAATCGGAATCGGAACCAGCTGAATCGGAGTCGGAACCAGCTGAATCTGAACCGTTAACTGATACAGAATCATTAGTAGATTCTTCTGATTCATCATCTGTGATGCCAATGGCGGTATCCGAAACAGAGGGAGAAGAAAGCTGCTTGACGGCACCTTCGACAATGTCTGAAGAAACTGATGGTTGGAGTGATTGGAGTAGCGATGAGGAACAACCCGTTCGGAGGGGAAGTGACGCGGAGGAATGGAACCATCAAAGGAAGAGGCGCCGTAATGAAATTAATGAAAAGATGAGAGTTTTGCAACAACTTCTACCTCGGTCTAATAATAAGTCTGATGAAGAGTCTATGCTCGATGCGGCAATTCAATACACGAAGTCACTGCAGTTACAAGTTCAGTTTATGCAGATGATGTCCATGAGATATGGCACGGTATCTATGATGTTTCCTGCAATCCAGCAGTATATGCGGCCACCAATTGGTATGGGAATGAACATGCCAGTAATGTCATTTCCCAATATGTTTCCTAGTTCTACTTCGTCTCTGAATTTCGGACCAAGGTTCTCTATGCCTTCTTTCCACATGCCGCATGTTTCTACACCTGGTTCATTCATAATTCCAGCAACAAATCCGGCAAATAATAACATGTCCACCTCAGTTGGAACATATAATTCAAATCATCTAGGTATCCCAAATTTTACTGATCCTTATCAACAGTACATGGGAGCCTACCAGATGCAGTCTCAATTAATGCAGAATCGGGCAATGAACCAAACAAATGTCAGCAAGTTCGAAAGTGGCCGCCAGTCAGGAGATAAATGA 1170 0.4573 MDPRKPFIAGDDIMELQWQNGRVVTQNQNHRNVNQPQPVRNSDDSTRGGSTSLPRENQYLFMHEGEMASVQHYANATMQGPPMRSEPVPPNFAFFARQGVRAEPEPAEPEPAEPEPAESESEPAESESEPAESEPLTDTESLVDSSDSSSVMPMAVSETEGEESCLTAPSTMSEETDGWSDWSSDEEQPVRRGSDAEEWNHQRKRRRNEINEKMRVLQQLLPRSNNKSDEESMLDAAIQYTKSLQLQVQFMQMMSMRYGTVSMMFPAIQQYMRPPIGMGMNMPVMSFPNMFPSSTSSLNFGPRFSMPSFHMPHVSTPGSFIIPATNPANNNMSTSVGTYNSNHLGIPNFTDPYQQYMGAYQMQSQLMQNRAMNQTNVSKFESGRQSGDK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03781 389 MobiDBLite consensus disorder prediction 21 53 - -
Vivi6g03781 389 MobiDBLite consensus disorder prediction 101 206 - -
Vivi6g03781 389 MobiDBLite consensus disorder prediction 109 134 - -
Vivi6g03781 389 Pfam Helix-loop-helix DNA-binding domain 203 245 IPR011598 GO:0046983
Vivi6g03781 389 Gene3D - 193 255 IPR036638 GO:0046983
Vivi6g03781 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Vivi6g03781 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 262 IPR036638 GO:0046983
Vivi6g03781 389 MobiDBLite consensus disorder prediction 184 206 - -
Vivi6g03781 389 SMART finulus 200 250 IPR011598 GO:0046983
Vivi6g03781 389 MobiDBLite consensus disorder prediction 138 155 - -
Vivi6g03781 389 MobiDBLite consensus disorder prediction 163 178 - -
Vivi6g03781 389 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 14 379 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03781 Vivi-Chr6 133007137 133013929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03781 3 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 29.063 3.06e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g03781 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03781 - - vvo:131610058 713.761