Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01728 ATGCATAATACTGTTTGGTGCAGTACTGTCCATCTCAAACTTCCAGATATGTATTCATCAAATAGTTCCCTCAATGGAAATAACCTAACATTTTCCTCTAATTCACCTTTTTGTTCCTTTGAAAGCAACTCAACTTCATCAAAAGATGATCACAACATTCATTCCACTTTTCCTCTCACTCCTAATTTCTCTTTCTTTCAATTTCCATATTCTGATCCATTTGAAGACAGCCAAATTTTCCTCCAACAGCAACAGCAACATGATGTTGATTTTCAGCTTCATCAACCACCTATAGAGATGAATAACAACAACAGTACTACTGCTGATGATCAGGATCAGGCTTCGAAGAATTCGATAACCGATGCCAACAACAAAGATATTGTTAATAGTCTTGTACCTGCAGAAGGTGTTTCTGGTAAAGGCAAAACTGTAGCGGTTCAGCAGATCCAAAGGAGAAGATCTAGCAAGAGGGATCGACACAGCAAGATAAAAACGGCGAAAGGACTGAGGGATCGGAGAATGAGACTGTCGCTCGAAGTCGCGAAGAGGTTCTTCGGTCTTCAAGATATGTTAGGATTTGAGAAAGCAAGCAAAACTGTGGACTGGTTACTCAACCAATCAAAAGATGGAATCAAACAACTTGCAAGGGAAAAGAATATTCACTTTCCGAGTAAGAGTTCATCTTCAACTTCTGAATGTGAAGGAGTTTCAAGCTTGGAATACAATGAAGTTGGAAACCAAGAAGAAGAAAAAGTGGTTTTGAAGAAAAGAAGAAAAGGTACTAACAAGGTTTGTAGAAAGAGTGCATTCAATTCCACTGGTAGAGAAAAAGCAAGAGAAAGAGCAAGAGAAAGAACAAAGGAAAAAATGGAAGCTAGAACTAGAACTAGAATATCACTGGTTGATGAAACAAACTCAAAGCAATGCAATGAAGGAAGAACAAAAACTAACCTCACATGGAACCCCTTTGAAACTGTGGTGGAATCTGCAGGTACACAAACTGTGAATTATCATCCTCATCCTTCATTTGATCATGTGAAGCTGATAAATAATGAAGCAGAAGATGAAAGAACCTCTCAAAAAGCAAAGGAACATCATTCACATTCACATGAAGATAATTCTTTGTTCAATATGAGCAAATGGAGTCCAACAATGATGTTCAACTCTCTCAACAACTTTCAAGAACATCAATTTGAACAATTTCATCAGTCTTTGGAAAAACCTTGGGATGGCTACAACAACCACTTCTAA 1251 0.3773 MHNTVWCSTVHLKLPDMYSSNSSLNGNNLTFSSNSPFCSFESNSTSSKDDHNIHSTFPLTPNFSFFQFPYSDPFEDSQIFLQQQQQHDVDFQLHQPPIEMNNNNSTTADDQDQASKNSITDANNKDIVNSLVPAEGVSGKGKTVAVQQIQRRRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKDGIKQLAREKNIHFPSKSSSSTSECEGVSSLEYNEVGNQEEEKVVLKKRRKGTNKVCRKSAFNSTGREKARERARERTKEKMEARTRTRISLVDETNSKQCNEGRTKTNLTWNPFETVVESAGTQTVNYHPHPSFDHVKLINNEAEDERTSQKAKEHHSHSHEDNSLFNMSKWSPTMMFNSLNNFQEHQFEQFHQSLEKPWDGYNNHF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01728 416 Pfam TCP family transcription factor 155 292 IPR017887 -
Vivi1g01728 416 ProSiteProfiles R domain profile. 272 289 IPR017888 -
Vivi1g01728 416 MobiDBLite consensus disorder prediction 353 373 - -
Vivi1g01728 416 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 111 386 IPR005333 GO:0003700
Vivi1g01728 416 Coils Coil 275 295 - -
Vivi1g01728 416 ProSiteProfiles TCP domain profile. 156 214 IPR017887 -
Vivi1g01728 416 MobiDBLite consensus disorder prediction 270 294 - -
Vivi1g01728 416 MobiDBLite consensus disorder prediction 353 375 - -
Vivi1g01728 416 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01728 Vivi-Chr1 37413338 37414979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01728 152 324 TCP Transcription Factor Family AT1G67260 37.245 3.86e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi1g01728 TCP 1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01728 - - vvo:131604382 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00676 6 20572717 20574478 Vivi1g01728 1 37413338 37414979 ECH
Vivi1g01728 1 37413338 37414979 Vivi1g01728 1 37413338 37414979 ECH