Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9500g00002 ATGTCTTCCTCGAGACCCAGCCAATCATCCAGCAATTCAGGGAGATCAAGACATAGTGCTAGGGTTCTTGCCCAGACAACTGTAGATGCAAAGCTTCATGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGATTACTCCAGTTCGGTGCGAGTCTCTGGTACAGCTGATGGAGTCAATCAACCAAGGTCTGATAAAGTTACGACAGCTTACCTCCATAACATACAGAGAGGAAAGATGATTCAGCCTTTTGGATGCTTGTTGGCTTTAGATGAGAAAACATGCAAGGTCATTGCATACAGTGAGAACGCTCCTGAAATGCTGACCATGGTTAGTCATGCTGTCCCCAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACTGACATAAAAACTTTGTTCACAGCACCTAGTGCTTCTGCATTGCAAAAGGCTCTGGGATTTGGGGAGGTTTCACTTCTTAACCCGATCCTTGTTCATTGCAAGACCTCTGGGAAGCCCTTTTATGCGATTATTCATCGTGTTACTGGCAGTTTGATCATTGACTTTGAGCCAGTCAAGCCTTATGAAGTTCCCATGACTGCAGCTGGTGCCTTGCAGTCTTACAAGCTTGCTGCCAAAGCAATTACCCGGTTGCAATCTTTGCCTAGTGGAAGCATGGACAGATTATGTGATACAATGGTTCAAGAAGTTTTTGAGCTCACAGGCTATGACAGGGTGATGGCTTATAAATTTCACGATGATGACCATGGGGAGGTGATTGCTGAGATAACAAAGCCAGGCCTTGAGCCATATTTGGGTTTGCATTATCCAGCCACAGATATTCCCCAGGCTTCACGCTTTTTATTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTCATGCAAAACACGTTAAAGTTCTGCAAGATGAAAAACTCCCATTTGATTTGACTTTGTGTGGTTCCACCTTGAGGGCTCCTCATAGTTGTCATGCTCAATACATGGCAAACATGGATTCAATTGCTTCCCTGGTCATGGCAGTTGTAGTCAATGACAACGAAGAAGATGGTGACACTGATGCTGTTCAGCCACAAAAAAGGAAGAGACTTTGGGGTTTGGTAGTTTGCCATAACACTACTCCCAGGTTCGTTCCCTTTCCTCTTAGGTATGCTTGTGAATTTCTGGCCCAAGTATTTGCCATCCATGTGAACAAAGAAATAGAGTTAGAATATCAGATTATTGAGAAGAATATCCTCCGCACACAGACACTCTTGTGTGATATGCTGATGCGAGATGCACCCCTTGGAATTGTATCACAGAGCCCTAATATAATGGATCTAGTGAAATGTGATGGAGCAGCACTCTTATATAAGAACAAGTTATGGAGATTAGGAGTGACACCAAGTGAATCCCAGATAAGAGAGATTTCTCTGTGGCTGTCCGAGTACCATATGGATTCCACAGGCTTGAGTACGGATAGCTTGTCTGATGCAGGCTTCCCATCGGCTCTTTCTATGGGTGATGTTGTGTGTGGAATGGCAGCTGTCAGAATTACTTCGAAAGACGTGGTATTTTGGTTTCGGTCACACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAGGCTGGAGAAAAAGATGACGGTAGGAGGATGCATCCGAGATCGTCATTCAAGGCTTTCCTTCAAGTCGTGAAGGCAAGGAGCTTGCCGTGGAAGGACTATGAAATGGATGCCATTCATTCCTTACAGTTAATACTGAGAAATGCATTCAGAGATTCTGAGGGTACAGATTTACAGACAACTGCAATTAATACAAAACTAAGTGATCTGAAGATCGAAGGGATGCAGGAACTGGAAGCAGTTACAAGCGAGATGGTTAGGTTGATTGAAACAGCAACAGTGCCTATTTTGGCAGTTGATGTCGATGGGCTTGTAAACGGGTGGAACATAAAAGTTGCTGAGTTGACAGGTCTTCCAGTTGGTGAAGCTATTGGAAAACATTTACTCACACTTGTCGAGGATTCTTCAACTGATAGAGTCAAGAAGATGCTTGACTTGGCACTACAAGGTGAAGAAGAGAAGAATGTTCAATTTGAGATCAAAACGTTCGGGTCCAAGATGGACTCTGGTCCTATTAGTCTAGTAGTAAACGCTTGTGCAAGCAGGGATCTTCGAGACAATGTTGTTGGTGTTTGCTTTGTGGCTCATGATATAACTGCTCAGAAGAATGTAATGGACAAATTCACACGTATTGAAGGTGATTACAAGGCAATTGTACAGAACCCCAATCCATTAATCCCCCCTATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGTCAAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTGGGAGAGGTTTTTGGCACCCAGATGTCTTGTTGTCGACTAAAGAACCAAGAAGCTTTTGTTAATTTTGGCATTGTACTTAATAAAGCCATGACTGGCTCAGAAACAGAGAAAGTTGCTTTTGGTTTCTTGGCTCGGAATGGCAAGTATGTAGAGTGCCTACTTTCTGTGAGTAAGAAGTTGGACGTAGAGGGCCTAGTTACTGGGGTCTTCTGCTTCTTACAGCTAGCTAGCCCGGAACTCCAGCAAGCATTGCATATTCAGCGTCTATCTGAAAAAACTGCCTTGAAGAGATTGAATGCATTAACTTACATGAAAAGGCAGATCAGGAATCCTTTATGTGGGATTATATTTTCACGGAAAATGTTGGAGGGTACTGAATTGGGAACAGAACAGAAACAATTTCTGCATACTAGTGCTCAGTGCCAGCGGCAACTTAGCAAAATTCTTGATGACTCAGATCTTGACAGCATCTTAGACGGTTACTTGGATCTTGAGATGGCTGAATTTACTCTGCATGAAGTAATGATTGCCTCCATTAGCCAAGTCATGACAAAAAGTAATGGAAAGAGTATCCGAATAGTCAATGATGTTGCAGAACAAATCGTAATGGAAACTTTATACGGTGATAGTCTAAGGCTTCAGCAGGTCTTGGCTGACTTCTTACTTATTTCCATCAATTTCACACCAAATGGAGGCCAGGTTGCTGTAGCAGGCTCTCTAACCAAAGAGCAGTTAGGGAAGTCGGTCCATCTTGTTAAGTTAGAGCTCAGCATAACACATGGTGGGAGTGGGGTGCCAGAAGCATTACTGAACCAGATGTTTGGAAATAATGGACTAGAATCGGAGGAGGGTATGAGCCTACTGATCAGCAGAAAGCTGTTGAAGCTCATGAATGGAGATGTTCGCTATCTAAGGGAAGCAGGCAAATCAGCTTTTATCCTCTCTGCTGAACTTGCTGCAGCCCATAATTTGAAAGCTTAA 3372 0.4359 MSSSRPSQSSSNSGRSRHSARVLAQTTVDAKLHATFEESGSSFDYSSSVRVSGTADGVNQPRSDKVTTAYLHNIQRGKMIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMDRLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHAQYMANMDSIASLVMAVVVNDNEEDGDTDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKLWRLGVTPSESQIREISLWLSEYHMDSTGLSTDSLSDAGFPSALSMGDVVCGMAAVRITSKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKAFLQVVKARSLPWKDYEMDAIHSLQLILRNAFRDSEGTDLQTTAINTKLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKVAELTGLPVGEAIGKHLLTLVEDSSTDRVKKMLDLALQGEEEKNVQFEIKTFGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMSKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFVNFGIVLNKAMTGSETEKVAFGFLARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEKTALKRLNALTYMKRQIRNPLCGIIFSRKMLEGTELGTEQKQFLHTSAQCQRQLSKILDDSDLDSILDGYLDLEMAEFTLHEVMIASISQVMTKSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINFTPNGGQVAVAGSLTKEQLGKSVHLVKLELSITHGGSGVPEALLNQMFGNNGLESEEGMSLLISRKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLKA 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9500g00002 1123 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Vium9500g00002 1123 Pfam PAS fold 749 871 IPR013767 GO:0006355
Vium9500g00002 1123 Pfam PAS fold 619 733 IPR013767 GO:0006355
Vium9500g00002 1123 ProSiteProfiles Histidine kinase domain profile. 900 1119 IPR005467 -
Vium9500g00002 1123 SMART HisKA_10 893 958 IPR003661 GO:0000155|GO:0007165
Vium9500g00002 1123 Gene3D - 405 578 IPR043150 -
Vium9500g00002 1123 FunFam Phytochrome 612 743 - -
Vium9500g00002 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Vium9500g00002 1123 Gene3D - 933 1110 IPR036890 -
Vium9500g00002 1123 CDD PAS 627 733 IPR000014 -
Vium9500g00002 1123 CDD PAS 760 871 IPR000014 -
Vium9500g00002 1123 PANTHER OS08G0260000 PROTEIN 67 954 - -
Vium9500g00002 1123 Gene3D PAS domain 762 874 - -
Vium9500g00002 1123 Pfam GAF domain 219 400 IPR003018 GO:0005515
Vium9500g00002 1123 FunFam Phytochrome 405 539 - -
Vium9500g00002 1123 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Vium9500g00002 1123 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1005 1113 IPR003594 -
Vium9500g00002 1123 Gene3D PAS domain 73 321 - -
Vium9500g00002 1123 ProSiteProfiles PAC domain profile. 689 745 IPR000700 -
Vium9500g00002 1123 SMART gaf_1 218 410 IPR003018 GO:0005515
Vium9500g00002 1123 MobiDBLite consensus disorder prediction 1 22 - -
Vium9500g00002 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Vium9500g00002 1123 Gene3D - 199 561 IPR029016 -
Vium9500g00002 1123 NCBIfam PAS domain S-box protein 623 739 IPR000014 -
Vium9500g00002 1123 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Vium9500g00002 1123 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Vium9500g00002 1123 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Vium9500g00002 1123 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Vium9500g00002 1123 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Vium9500g00002 1123 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Vium9500g00002 1123 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Vium9500g00002 1123 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Vium9500g00002 1123 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Vium9500g00002 1123 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Vium9500g00002 1123 Pfam Phytochrome region 413 586 IPR013515 GO:0006355|GO:0009584
Vium9500g00002 1123 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 390 IPR016132 -
Vium9500g00002 1123 PIRSF Phytochrome_conventional 1 1123 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vium9500g00002 1123 SMART HKATPase_4 1005 1117 IPR003594 -
Vium9500g00002 1123 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1107 IPR036890 -
Vium9500g00002 1123 Gene3D PAS domain 610 747 - -
Vium9500g00002 1123 SUPERFAMILY GAF domain-like 198 397 - -
Vium9500g00002 1123 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Vium9500g00002 1123 SUPERFAMILY GAF domain-like 408 585 - -
Vium9500g00002 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Vium9500g00002 1123 SMART pas_2 748 817 IPR000014 -
Vium9500g00002 1123 SMART pas_2 618 684 IPR000014 -
Vium9500g00002 1123 Pfam PAS fold 69 185 IPR013654 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9500g00002 Vium-Chr9500 6221 16859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9500g00002 1 1119 Histidine Kinase Gene Family AT1G09570 80.588 0.0 1907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9500g00002 K12120 - gmx:100790763 2060.42