Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7157g00002 ATGGCTGAAAAAGATGATGGGTTGGGGTTGGGGTTGAGTCTGAGATGGGGAGAAAATGATGATAATAACATGAATGAACAACACCCTTTCAAAATGCACAAACCTCCTCAACCTGTTCCAAACCAAAGGGCTTCTTCTTTCAATAGTTTGTTCCATTTCCATGGTGCCTCTCATGTGACCAATCGAAGCTCTGAGCCACTACCGTTCTTCTTTGGAATAGACGTCAACTTGCCACCACCATCGGTGGCACCATGCTACGAGGAGAACGGTGTGTCTTCGCCGAACAGTGCAGTTTCGAGCATCAGTGCGAAGAGGAACGAAAGAGAGGAGAATGAGAGAGGGTCATGTTCTCGAGGAGGAAGCGAAGATGATGATGGCGGAGGGTGTGTTGATGCCGATGGCGACACGTCGAGGAAGAAACTGAGGTTGTTGAAAGATCAGGCCTTGGTGCTTGAAGAAACATTCAAGGAACATAACACTCTGAATCCTAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAGTCCTAGACAGGTTGAAGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAGGTGCTATGAGAATCTAACGGATGACAATAGGAGGCTACAGAAGGAAGTGCAAGAGCTAAGAGCATTGAAGTTTTCCCCACAGCTCTACATGCACATGAACCCTCCAACCACTCTTACAATGTGCCCTTCCTGTGAGCGTGTTGCTGTCTCATCTGCATCCTCCTCATCGGCCTCCATGCCTTCTGTGCCGCCTTCAGACAATCACAACCCATTAGGCCCTACCATCCGGCGGCCAGTGCCTGTCAACCCTTGGGCCGCGATGTCAATTCAGCACCGTCCCCCACCATAA 903 0.4862 MAEKDDGLGLGLSLRWGENDDNNMNEQHPFKMHKPPQPVPNQRASSFNSLFHFHGASHVTNRSSEPLPFFFGIDVNLPPPSVAPCYEENGVSSPNSAVSSISAKRNEREENERGSCSRGGSEDDDGGGCVDADGDTSRKKLRLLKDQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTDDNRRLQKEVQELRALKFSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSASMPSVPPSDNHNPLGPTIRRPVPVNPWAAMSIQHRPPP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7157g00002 300 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Vium7157g00002 300 Gene3D - 143 192 - -
Vium7157g00002 300 FunFam Homeobox-leucine zipper protein 18 123 199 - -
Vium7157g00002 300 MobiDBLite consensus disorder prediction 86 135 - -
Vium7157g00002 300 Pfam HD-ZIP protein N terminus 1 109 IPR006712 GO:0005634
Vium7157g00002 300 CDD homeodomain 138 195 IPR001356 GO:0003677
Vium7157g00002 300 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Vium7157g00002 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 267 - -
Vium7157g00002 300 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Vium7157g00002 300 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Vium7157g00002 300 MobiDBLite consensus disorder prediction 103 120 - -
Vium7157g00002 300 Pfam Homeobox associated leucine zipper 194 227 IPR003106 GO:0006355|GO:0043565
Vium7157g00002 300 SMART HOX_1 136 198 IPR001356 GO:0003677
Vium7157g00002 300 MobiDBLite consensus disorder prediction 1 43 - -
Vium7157g00002 300 MobiDBLite consensus disorder prediction 257 284 - -
Vium7157g00002 300 Coils Coil 200 227 - -
Vium7157g00002 300 SUPERFAMILY Homeodomain-like 123 195 IPR009057 -
Vium7157g00002 300 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7157g00002 Vium-Chr7157 21644 24773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7157g00002 36 298 Homeobox Transcription Factor Family AT3G60390 59.364 2.95e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium7157g00002 HD-ZIP_N 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7157g00002 K09338 - gmx:100810641 391.734