Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5843g00003 ATGCCAAGAATGACTGGTTATGATCTGCTGAGAAAAATCAAGGAATCTAAATCACTTAAAAACATACCAGTTGTGATTATGTCCTCTGAGAATGTGCCATCAAGGATCAACAGATGTTTGGAAGAAGGAGCAGAGGAATTCTTTCTGAAACCAGTTCAACAAGTAGATGTGAATAAGCTGAAACCACATTTGATGAAATCAAGAACTAAAGAAGAGAATGAGCAACCATTGAATAACAAAAGCAAGGATATGGAAGAAATTTATTCTCCAAACAAAACCAGATTGAGATGTAGCAGTTAG 300 0.3567 MPRMTGYDLLRKIKESKSLKNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQVDVNKLKPHLMKSRTKEENEQPLNNKSKDMEEIYSPNKTRLRCSS 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5843g00003 99 ProSiteProfiles Response regulatory domain profile. 1 65 IPR001789 GO:0000160
Vium5843g00003 99 Gene3D - 1 94 - -
Vium5843g00003 99 MobiDBLite consensus disorder prediction 63 99 - -
Vium5843g00003 99 Pfam Response regulator receiver domain 1 56 IPR001789 GO:0000160
Vium5843g00003 99 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 79 IPR045279 GO:0009736
Vium5843g00003 99 SUPERFAMILY CheY-like 1 68 IPR011006 -
Vium5843g00003 99 MobiDBLite consensus disorder prediction 63 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5843g00003 Vium-Chr5843 60885 62006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5843g00003 1 77 Response Regulator Gene Family AT2G41310 70.130 4.11e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium5843g00003 Response_reg 1.3e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5843g00003 K14492 - gmx:100787436 180.644