Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium493g00001 ATGGTGAAACCGGCCATTACCAGAGTTGATTCTTCTTCTTCTTCCTCTTCTTCTCCCACTTCTTGCAATGACTCATTCTCCACCAACAATTCCAGTGCCGCCTGCAAGATGTACAAAGGAGTGAGGAAGAGAAAATGGGGGAAATGGGTGTCTGAAATTCGGCTTCCAAACAGCCGTGAGCGTATATGGTTGGGCTCTTACGACACGCAAGTGAAGGCAGCAAGAGCCTTTGATGCTGCTCTCTATTGCCTGCGTGGGAAGGGTGCCAGTTTCAACTTCCCCGACACGCCTCATCGCTTCGAAATGGAGTCGCTCAAGATACCCTGCAGCCACCAAGAGATCCAGGAGGTGGCGGCCAAGTTTGCGAACAAGGTGGTGGAGATTTTGGCAGAAGAAGAAGAAGATGGAGAAGTTGGAGTTCAGAGTGAGTCTATGTCTGACCACACCACACACACAGAAATAAACACGACCTTTCCTATTTATGATGGTGGGACAAACAATGATGTTCGAGTGGACCAAGACACCATGGATTGGACATTTATGAACATGTTGGATGACTTGAATGGCTCCGATTTTGGCCTCTATTTTGAAGCAGAGAAGGGTGAGTTTTTGTGCCCCACAACACACACTCCACTACTCTTTCACAATGGAGATGAGATTGAAGTTGATGATCATGATCATGATGCTTTTTCTAACCACTCTTTTCTTTGGAGTTGGAACTTTTGA 726 0.4669 MVKPAITRVDSSSSSSSSPTSCNDSFSTNNSSAACKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQVKAARAFDAALYCLRGKGASFNFPDTPHRFEMESLKIPCSHQEIQEVAAKFANKVVEILAEEEEDGEVGVQSESMSDHTTHTEINTTFPIYDGGTNNDVRVDQDTMDWTFMNMLDDLNGSDFGLYFEAEKGEFLCPTTHTPLLFHNGDEIEVDDHDHDAFSNHSFLWSWNF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium493g00001 241 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Vium493g00001 241 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vium493g00001 241 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Vium493g00001 241 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Vium493g00001 241 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Vium493g00001 241 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Vium493g00001 241 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Vium493g00001 241 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Vium493g00001 241 MobiDBLite consensus disorder prediction 7 28 - -
Vium493g00001 241 MobiDBLite consensus disorder prediction 1 28 - -
Vium493g00001 241 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Vium493g00001 241 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Vium493g00001 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium493g00001 Vium-Chr493 16221 17285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium493g00001 32 189 AP2-EREBP Transcription Factor Family AT1G74930 49.367 7.05e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium493g00001 AP2 9.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium493g00001 - - vum:124843463 495.352