Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1716g00010 ATGTGCAAGCAAGCCATGGAGGGTAGTAGTAGTTCTAATGGCACTTCTTATTTGTTGGCTTTTGGAGAAAACAGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTGACTTCCCATCATGCTGGTCATCATCCAATAAATCCTAATCCTAGTAATAATACCAATAATAATGCAAACACAAACTGTCTCTTCATTCCCAACTGCAGTAACAGTGGAACTCCTTCTATCATGCTCGACAATAACCACAACAACAACGATGATAACAACACTGGGGTAGGGTACTATTTCATGGAGAGTGGCCATCCCAACCACCGCAGCAACAACAATGGAAGCTCCTCCTCCTCCTCCTCTTCTGCTGTCAAGGCTAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGAGCCCCGCCTGAAGTGGTGGCAAGGTTAGAGGAAGCCTGTGCTTCTACGGTGACAATGGCCGGAGATGCACCTGGATCGAGCTGCATAGGTGAGGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGCGAGATGCTGACCAAGTATGAGCAAGAACTCTCCAAACCCTTAAAAGAAGCCATGCTCTTCCTTCAAAGGGTTGAGTGTCAGCTCAAAAACCTAACAGTTTCTTCCTCCGACTTCGGTTGTAATGAGGGTGGTGATAGGAATGGATCATCTGAAGAAGATGTTGATCTACAGAGCATGATAGATCCGCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTCTGCGGAAGTACAGTGGATACTTGGGCAGTCTTAAGCAGGAGTTCATGAAAAAGAGGAAAAAGGGAAAGCTACCTAAAGAAGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAGTCACAGAAGCTGGCTCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCGGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTACTACGTCGACACTGTTATGGCCAATCCATTTCCCATGGATCTCTCCCATCCCATGCTCTAG 1125 0.4702 MCKQAMEGSSSSNGTSYLLAFGENSGGLCPMTMMPLVTSHHAGHHPINPNPSNNTNNNANTNCLFIPNCSNSGTPSIMLDNNHNNNDDNNTGVGYYFMESGHPNHRSNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASTVTMAGDAPGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRVECQLKNLTVSSSDFGCNEGGDRNGSSEEDVDLQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYVDTVMANPFPMDLSHPML 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1716g00010 374 Pfam KNOX2 domain 173 220 IPR005541 GO:0003677|GO:0005634
Vium1716g00010 374 MobiDBLite consensus disorder prediction 96 119 - -
Vium1716g00010 374 SMART KNOX2_2 170 221 IPR005541 GO:0003677|GO:0005634
Vium1716g00010 374 MobiDBLite consensus disorder prediction 102 119 - -
Vium1716g00010 374 Pfam ELK domain 256 277 IPR005539 GO:0003677
Vium1716g00010 374 CDD homeodomain 288 340 IPR001356 GO:0003677
Vium1716g00010 374 Pfam Homeobox KN domain 296 335 IPR008422 GO:0003677|GO:0006355
Vium1716g00010 374 Pfam KNOX1 domain 120 159 IPR005540 GO:0003677|GO:0005634
Vium1716g00010 374 ProSitePatterns 'Homeobox' domain signature. 314 337 IPR017970 GO:0000981|GO:0006355
Vium1716g00010 374 SMART HOX_1 278 343 IPR001356 GO:0003677
Vium1716g00010 374 ProSiteProfiles ELK domain profile. 256 276 IPR005539 GO:0003677
Vium1716g00010 374 Gene3D - 281 343 - -
Vium1716g00010 374 SUPERFAMILY Homeodomain-like 278 354 IPR009057 -
Vium1716g00010 374 SMART KNOX1_2 119 163 IPR005540 GO:0003677|GO:0005634
Vium1716g00010 374 ProSiteProfiles 'Homeobox' domain profile. 276 339 IPR001356 GO:0003677
Vium1716g00010 374 FunFam Homeobox protein knotted-1-like 2 281 343 - -
Vium1716g00010 374 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 345 - -
Vium1716g00010 374 SMART ELK_2 256 277 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1716g00010 Vium-Chr1716 81490 87740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1716g00010 121 374 Homeobox Transcription Factor Family AT1G62360 79.008 1.16e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium1716g00010 KNOX2 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1716g00010 - - gmx:100805837 629.402