Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15059g00001 ATGATTAAAAGAGCTGAGTTTTCAAAGGCTGCTTCTAGCAGCAAAGGTTCTGAGCATTCCTCAGTGATAAATTCGTGTAATGGATCAGTCGAAAGCCAAAACCCTTTGAGTTCTGATGCATCAAACCTTGTTCCTGATGAGCAATCTCCAGCTGTTGGTCATAACAGTGGTCTTGTTGTTCGCGGATCTCGGGGTCTGCATCGTAACCAAAAATCAAGCTCGGTAGGTTTTGAAGGAAAGGGAAAAGCTGAAACAAAGTACAGTGATGAAGGCTTGTTAGAATCTTCTTCCGTATGCTCTCTTGGAGCCTCAAACAACAGAAACGTCTGTGGTAGGAAACATGATGACATCGATGACTCGGTGCAGAACTATGAAGAAGCAGAAGATGTAGTGAAGGAAAAGCCTGCTCGGGAAGGCACAGGAGTGAAGAGAAGTAGGAATGCAGAAGTTCATAATTTGTGTGAAAGGAAACGAAGAGATAAGATAAACAAGAGGATGCATATATTGAGGGAGCTCATACCCAACTGCAACAAGACTGATAAAGCTTCAATGCTTGATGATGCCATTGAATATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGAAAATGGGTGGCGGATTTTGCATGCCTTTTATGATGTTACCTGGTCATGGTATGATGAACGCACCCCATTTGCAGCAGTTAATGGGAGTTGAAATGGGGTTAAGGTCAGGCACAACCATCCCTTGCAATCTGCCTCAGTTCGCTACGATACCTTTGCCTGCAATCACTGACAACAGAGTTCATATGTTCCGTTTCCCAAACCAAGTTCCGACCATGCCCATTTCTCATGCATCGTTCATTCCAATGGTTGGAAATCCTCGTATTCCAACCGGCACAGCTACCAACATGGCTGAAAACCCTTCCCACCAGTTAACTACTCTATTGGCCTCACTCTCCAAGAACTCATATCTTAATGGACAAACTGAACTTGCAACAAAACAACCATTGAATCAGGTTTTCCCTCACCAGTAG 1017 0.4366 MIKRAEFSKAASSSKGSEHSSVINSCNGSVESQNPLSSDASNLVPDEQSPAVGHNSGLVVRGSRGLHRNQKSSSVGFEGKGKAETKYSDEGLLESSSVCSLGASNNRNVCGRKHDDIDDSVQNYEEAEDVVKEKPAREGTGVKRSRNAEVHNLCERKRRDKINKRMHILRELIPNCNKTDKASMLDDAIEYLKTLKLQLQIMKMGGGFCMPFMMLPGHGMMNAPHLQQLMGVEMGLRSGTTIPCNLPQFATIPLPAITDNRVHMFRFPNQVPTMPISHASFIPMVGNPRIPTGTATNMAENPSHQLTTLLASLSKNSYLNGQTELATKQPLNQVFPHQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15059g00001 338 Gene3D - 142 204 IPR036638 GO:0046983
Vium15059g00001 338 SMART finulus 152 201 IPR011598 GO:0046983
Vium15059g00001 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 210 IPR036638 GO:0046983
Vium15059g00001 338 MobiDBLite consensus disorder prediction 10 49 - -
Vium15059g00001 338 Pfam Helix-loop-helix DNA-binding domain 150 195 IPR011598 GO:0046983
Vium15059g00001 338 PANTHER TRANSCRIPTION FACTOR PIF3 20 309 IPR044273 GO:0003700|GO:0006355
Vium15059g00001 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Vium15059g00001 338 MobiDBLite consensus disorder prediction 123 144 - -
Vium15059g00001 338 FunFam Basic helix-loop-helix transcription factor 141 204 - -
Vium15059g00001 338 CDD bHLH_AtPIF_like 146 208 IPR047265 -
Vium15059g00001 338 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15059g00001 Vium-Chr15059 2194 3916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15059g00001 112 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 59.130 2.39e-34 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium15059g00001 HLH 2.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15059g00001 K12126 - gmx:100818543 429.098