Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1376g00002 ATGGCAGGTAACAGTAGCTCGGAGGGGTTGGGAGATGATTTCTTCGAACAGATCTTAGCAGTGCCCGAAGCTCCAGTTGGATATGGCAGAACCGTAGCCACTGACGTTGGAATGCTGCAATTGGGGTCCACAACTCCAACTGCCGCTGCTCTCAGAGGTGGTGGAATGATGCCTCTGGGCCTGAATTTGGAGCAATCTGCCTTTCTAAGCCACCATGATTCCAGAAACCTAGTTGACGACGTTGTTAATGTTGATCCCACCGTTCACAATAATCACCACCACCATCATCAACACCTCACGCTCCATAATAACAACTCATCACCCTCTTCTACCCCACCAATCACCGATCGCGATTCGATGCATGTGAGAGGTTTGTTTTCAGCGTTTGGACAGTTGCATAGTCCTACTCTTGTTCCCTCTGTCCGCCCCACGCTGTCATCGCCTCCACCGCCGCCTCAGCCACAGCTCCACCTCCACCACCATAACCAACAGGCGTTTCAAGGGCAGGGAGGTGGAGGTCCAGCGTCTATGAGTGGTACCCAACAAGCACCTGGCATTCGTCCTCGTGTGAGAGCAAGAAGAGGGCAAGCCACAGATCCACACAGTATCGCTGAACGGTTGCGTCGCGAAAGAATTGCCGAAAGAATGAAGGCATTGCAGGAGTTAGTTCCCAGCATCAATAAGACGGACAGAGCGGCGATGCTTGATGAAATTGTGGATTATGTCAAGTTTCTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGGGGAGCTGGTGCAGTTGCTCAACTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGCAAGGGGAGGACATAGAAGGTGGATCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGACGGTACAGAACAACAAGTTGCTAAACTTATGGAAGAAGATGTGGGTGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGCATCATGCCCATATCTCTAGCCTCGGCCATTTTTCGTATGCCTCAATCAGAATCATCAACAGTGATCAAGCCTGAATCAAACAGTCACTGA 1059 0.508 MAGNSSSEGLGDDFFEQILAVPEAPVGYGRTVATDVGMLQLGSTTPTAAALRGGGMMPLGLNLEQSAFLSHHDSRNLVDDVVNVDPTVHNNHHHHHQHLTLHNNNSSPSSTPPITDRDSMHVRGLFSAFGQLHSPTLVPSVRPTLSSPPPPPQPQLHLHHHNQQAFQGQGGGGPASMSGTQQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEDIEGGSNEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSESSTVIKPESNSH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1376g00002 352 MobiDBLite consensus disorder prediction 142 156 - -
Vium1376g00002 352 MobiDBLite consensus disorder prediction 101 116 - -
Vium1376g00002 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Vium1376g00002 352 MobiDBLite consensus disorder prediction 89 118 - -
Vium1376g00002 352 FunFam Basic helix-loop-helix transcription factor 191 253 - -
Vium1376g00002 352 Gene3D - 191 253 IPR036638 GO:0046983
Vium1376g00002 352 Pfam Helix-loop-helix DNA-binding domain 201 245 IPR011598 GO:0046983
Vium1376g00002 352 SMART finulus 202 251 IPR011598 GO:0046983
Vium1376g00002 352 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 331 - -
Vium1376g00002 352 MobiDBLite consensus disorder prediction 157 183 - -
Vium1376g00002 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 255 IPR036638 GO:0046983
Vium1376g00002 352 MobiDBLite consensus disorder prediction 137 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1376g00002 Vium-Chr1376 22061 26735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1376g00002 178 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 75.862 7.56e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1376g00002 HLH 3.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1376g00002 - - gmx:100807570 416.001