Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02001 ATGACTTTAGAAACTCTTCCATCCAATGAGTTTTCCAACTTCATTGTCTACGACACTATCTCTGCAACTCCATTTAGCAGCCATGACTCTTCGGAGGCTAGTTTCTTGAAAAGTTTTGTGAACTATCAGGAACATGACCCTTCATTTGATGATAGCTCAATGAGGACCCGAAAGCGCAAAGCCAGTGAGCTAGAAGCCAACGGCAGGAAGCAGAATGTGATGGGGGTGCAAGGTAGGAAGAAGAGGAGAAGAAAGCCAAGGGTTTGCAAAAACAAGGAAGAGGCCGAGACACAAAGAATCACTCATATTACAGTGGAAAGAAACCGCCGAAAGCAGATGAATGAGCATCTTGCTGTACTTCGTTCACTCATGCCTGAGTCCTACGTCCAGAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACCTCCTGCAAACACTGGAAGCAAGAAAGCTGCAACTTTTACAGCAAGAAGTGGTGCAAACCAATGAAAATACGGTCATTTCCGAACTCATGCAACCCCCTTTTGCACAATTTTTTTTGTATCCTCAGTACACATGGTCCCAGAGTCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTCACTTTAATCGAGACCCATGCAAATCTTCGAATTCTCACTAGGAAAAGCCTCGGCCAGCTAACCAAGTTAGTATCTGGTTTCCAAACTCTCTACCTCACCGTCCTACATCTTAATGTCACCACCATAGACCCTTTGGTCTTCTATTCCATCAGTGCTAAGGTTGAAGAAGGATTCCAGCTTGGTTCAGTAGATGGTATTGCATCGGCAGTTCATCATTTGCTTGCAAGAATTGAAGATGAGGCTTTGCTTTGCTGTTGA 903 0.4518 MTLETLPSNEFSNFIVYDTISATPFSSHDSSEASFLKSFVNYQEHDPSFDDSSMRTRKRKASELEANGRKQNVMGVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQTLEARKLQLLQQEVVQTNENTVISELMQPPFAQFFLYPQYTWSQSPNKYTSKTKAAIADIEVTLIETHANLRILTRKSLGQLTKLVSGFQTLYLTVLHLNVTTIDPLVFYSISAKVEEGFQLGSVDGIASAVHHLLARIEDEALLCC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02001 300 Coils Coil 145 165 - -
Vimu11g02001 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Vimu11g02001 300 PANTHER MAX DIMERIZATION, MAD 44 296 - -
Vimu11g02001 300 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Vimu11g02001 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 166 IPR036638 GO:0046983
Vimu11g02001 300 MobiDBLite consensus disorder prediction 72 94 - -
Vimu11g02001 300 MobiDBLite consensus disorder prediction 48 65 - -
Vimu11g02001 300 CDD bHLH_AtFAMA_like 100 159 - -
Vimu11g02001 300 SMART finulus 103 154 IPR011598 GO:0046983
Vimu11g02001 300 MobiDBLite consensus disorder prediction 46 65 - -
Vimu11g02001 300 Gene3D - 89 166 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02001 Vimu-Chr11 31836618 31838126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02001 89 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 56.044 9.62e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g02001 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02001 - - pvu:PHAVU_003G284500g 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02001 11 31836618 31838126 Vimu11g02001 11 31836618 31838126 ECH