Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00660 ATGAGCTTTGGAAGCAGAGGGAAGATGAAAGATACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACAGCAGGAGGGACAAGATACTGGCTCAGTACAGTGCAGATGCTGAGATTCTGGCTGAGTTTGAGCAGTCTGGTGTGTCTGGCAAATCACTTGACTACTCCAGGATGGTCCTTGATCCTCCCAGGTTAGTGTCTGGAGAAAAAATGACTGCATATCTGTCCAAAATCCAAAGGGGTGGTCTTATCCAACCCTTTGGTTGTATGCTTGCAATTGAGGAACCCACTTTTAGGATCATTGGGTACAGTGAAAATTGCTTTCAGTTGTTGGGTTTGGAGCGGCAAATTGACTCTAAGATGTTAATAAATTTGATTGGGGTTGATGCAACAACCCTTTTTACTCCACCTTCTGGGGCTTCCCTAGCTAAAGCTGTGGCATCCAGGGAAATTTCTCTTCTGAATCCGATATGGGTCTACGCAAGGACAACCCAGAAGCCATTTTATGCCATACTACATAGGATCGATGTTGGGGTCGTGATTGATTTGGAGCCTGCGCGGTTGAGTGATCCGGCATTGTCACTTGCCGGGGCAGTTCAATCACAGAAGCTGGCTGTGAGGGCTATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGCTTGTTGTGTGACACAGTTGTTGAGGAAGTGCAGAAGCTTACTGGATATGACAGGGTAATGGTTTATAAGTTTCATGAGGATGATCATGGTGAGGTTGTAGCTGAGATTAGGAGGTCAGATTTGGAGCCTTACCTAGGTTTACATTATCCTGCCACGGATATCCCTCAAGCTTCTCGCTTCTTGTTCAAGCAAAACCGGGTTAGGATTATTTGTGATTGCCATGCAAAGCCAGTTAAGGTCATTCAGAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTGAATTCAACACTTAGGTTACCACATGGTTGTCACACACAGTACATGGCCAACATGGGATCAATTGCCTCTCTGGTGATGGCAATTATAGTCAATGGAAAGAATGAAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCACGATATGTTTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAACTTTATATGGAGATTCAATTGGCATCACAAGTGGCAGAAAAGAGAATGCTTAAAACTCAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCATTCGGCATTGTGACTCAGTCTCCAAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCCTTGTTTTATGATGGAAACTGCTGGTTGTTAGGTACATCCCCAACTGAAGCACAGGTAAAAGACATTGCAGAATGGCTTCTTAGTAATCATGGGGATTCAACAGGTTTGACAACAGATAGTTTAGCTGATGCTGGTTATCCAGGTGCTGCTTCACTGGGTGATGCGGTTTGTGGCATGGCCACGGCAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTCAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAGGGATGACGGAGGAAAAATGAACCCAAGATCATCATTCAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCTATTCACTCATTACAACTAATGATAAGAGATTCTTTCCAAGACACTGAGATCACCGGTCCAAAGACTTCAAACTATGTGCAGAAAACTGACACTTCAACTGGAAGGATGGATGAACTCAGTTCAGTAGCACTTGAAATGGTGAGATTAATCGAGACTGCAACAGTTCCGATTTTTGGGGTTGATTCAGGTGGGCTAATCAATGGATGGAATTCAAAGATTGCTGAACTGACAGGTCTACAAGGCAGTGAAGCTATGGGGAAATCCATGGTAAAGGAAATTATACATGCGGACTCATGTGACACTTTTAAAAATACTCTAAGCAGAGCCTTGCAAGGAGAGGAGGACAAAAGTGTTGAGTTGAAAATAAAGCACTTTGGGACTCAACAGCAACAGAAAGTTGTATATCTCATGGTCAATGCTTGCACTAGTAGGGACTACACAGATTCTGTTGTTGGGGTATGCTTTGTAGGTCAAGACATCACTTATGAGAAAATGGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCAATCGTGCAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGATGAGAGTGCCTGCTGTTCTGAATGGAATGCAGCCATGGAAAGACTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTGGTGAAATATTTGGAAGTTTTTGTCGACTAAAAGGTCAAGATACCCTGACTAATTTTATGATTTTAATATACCGTGGAATAAGTGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAATTTGTGGAGAGTTATATAACAGCAAACAAGAGAATTGATGCTGGTGGGAATGTACTCGGCTGTTTTTGCTTCTTGCAGGTTGTAATGCCAGACCTGAATCAGTCCTCTGAAGAACACAAGCCAAGAGGAAGAGAAAACATTTCTGAATCCAAAGAGTTAGCTTATATACTACAAGAGATGAAGAAACCTTTAAATGGCATACGATTCACGCACAAACTTTTGGAAAGTACAACTGTTTCAGAAAACCAAAAACAATTTCTTGACACCAGTGATGCATGTGAAAGACAAATCATGGCAATTATTGAGGATACAAATTTAGGAAGTATTAATGAAGGCACTTTGCAGCTAAACATGGAAGAATTTGTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATATTGATAAGAGAAAAGAACTTGCAACTGTTTCATGAAATTCCTGATGAAATAAAAGTGCTTTCTTTATATGGTGACCAAATTAGGCTTCAGGTGGTCTTGTCTGACTTTTTGCTTAATGTAGTCAGCCATACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAGATAATACAGGATGGCAATGAAATGACCCATTCTGGTCAAGGTCTTCCTTCAGATGTTCTTCATGATATGTTTGAAGGAGGGAATCAATGGAATACACAGGAAGGTCTAGGACTATACATGTCCAGAAAAATCCTCAGTAGGATGAGTGGTCAAGTCCACTACGTAAGAGAACAAAATAAGTGTTATTTTCTCATTGATCTTGACATTAGAACAAGAAAAGAAAGGCAAAAGAATTTGCATGCAGAGACAAGCATGTTAAGTTAG 3345 0.4146 MSFGSRGKMKDTSLSTSAESNMNSRRDKILAQYSADAEILAEFEQSGVSGKSLDYSRMVLDPPRLVSGEKMTAYLSKIQRGGLIQPFGCMLAIEEPTFRIIGYSENCFQLLGLERQIDSKMLINLIGVDATTLFTPPSGASLAKAVASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEPARLSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRIICDCHAKPVKVIQSEELRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGKNETRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQVAEKRMLKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALFYDGNCWLLGTSPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDRDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLMIRDSFQDTEITGPKTSNYVQKTDTSTGRMDELSSVALEMVRLIETATVPIFGVDSGGLINGWNSKIAELTGLQGSEAMGKSMVKEIIHADSCDTFKNTLSRALQGEEDKSVELKIKHFGTQQQQKVVYLMVNACTSRDYTDSVVGVCFVGQDITYEKMVQDKFIKLEGDYKAIVQSLSPLIPPIFSSDESACCSEWNAAMERLTGWKRDEVIGKLLPGEIFGSFCRLKGQDTLTNFMILIYRGISGQDSEKLPFGFFDRNGEFVESYITANKRIDAGGNVLGCFCFLQVVMPDLNQSSEEHKPRGRENISESKELAYILQEMKKPLNGIRFTHKLLESTTVSENQKQFLDTSDACERQIMAIIEDTNLGSINEGTLQLNMEEFVLGNILDAIVSQVMILIREKNLQLFHEIPDEIKVLSLYGDQIRLQVVLSDFLLNVVSHTPSPNGWVEIKISPGLKIIQDGNEMTHSGQGLPSDVLHDMFEGGNQWNTQEGLGLYMSRKILSRMSGQVHYVREQNKCYFLIDLDIRTRKERQKNLHAETSMLS 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00660 1114 Pfam Phytochrome region 402 576 IPR013515 GO:0006355|GO:0009584
Vimu10g00660 1114 SMART pas_2 737 807 IPR000014 -
Vimu10g00660 1114 SMART pas_2 606 673 IPR000014 -
Vimu10g00660 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 610 718 IPR035965 -
Vimu10g00660 1114 FunFam Phytochrome 394 524 - -
Vimu10g00660 1114 Pfam PAS fold 73 186 IPR013654 GO:0006355
Vimu10g00660 1114 Gene3D - 394 567 IPR043150 -
Vimu10g00660 1114 PANTHER OS08G0260000 PROTEIN 71 940 - -
Vimu10g00660 1114 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 991 1091 IPR003594 -
Vimu10g00660 1114 Gene3D - 922 1090 IPR036890 -
Vimu10g00660 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 752 854 IPR035965 -
Vimu10g00660 1114 ProSiteProfiles PAS repeat profile. 604 675 IPR000014 -
Vimu10g00660 1114 FunFam Phytochrome 751 859 - -
Vimu10g00660 1114 NCBIfam PAS domain S-box protein 611 730 IPR000014 -
Vimu10g00660 1114 Gene3D PAS domain 77 322 - -
Vimu10g00660 1114 SMART gaf_1 219 399 IPR003018 GO:0005515
Vimu10g00660 1114 SMART HKATPase_4 991 1098 IPR003594 -
Vimu10g00660 1114 Pfam GAF domain 219 389 IPR003018 GO:0005515
Vimu10g00660 1114 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g00660 1114 Pfam His Kinase A (phospho-acceptor) domain 881 942 IPR003661 GO:0000155|GO:0007165
Vimu10g00660 1114 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Vimu10g00660 1114 PRINTS Phytochrome signature 720 740 IPR001294 GO:0006355|GO:0009584
Vimu10g00660 1114 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Vimu10g00660 1114 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Vimu10g00660 1114 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Vimu10g00660 1114 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Vimu10g00660 1114 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Vimu10g00660 1114 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Vimu10g00660 1114 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Vimu10g00660 1114 PRINTS Phytochrome signature 700 717 IPR001294 GO:0006355|GO:0009584
Vimu10g00660 1114 Gene3D PAS domain 601 736 - -
Vimu10g00660 1114 ProSiteProfiles PAS repeat profile. 738 783 IPR000014 -
Vimu10g00660 1114 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 944 1096 IPR036890 -
Vimu10g00660 1114 CDD PAS 615 722 IPR000014 -
Vimu10g00660 1114 PIRSF Phytochrome_conventional 6 1105 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vimu10g00660 1114 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Vimu10g00660 1114 SUPERFAMILY GAF domain-like 199 385 - -
Vimu10g00660 1114 CDD HisKA 879 934 IPR003661 GO:0000155|GO:0007165
Vimu10g00660 1114 FunFam Phytochrome 600 732 - -
Vimu10g00660 1114 Pfam PAS fold 607 722 IPR013767 GO:0006355
Vimu10g00660 1114 Pfam PAS fold 738 858 IPR013767 GO:0006355
Vimu10g00660 1114 Gene3D PAS domain 751 860 - -
Vimu10g00660 1114 ProSiteProfiles Histidine kinase domain profile. 886 1098 IPR005467 -
Vimu10g00660 1114 ProSiteProfiles PAC domain profile. 678 734 IPR000700 -
Vimu10g00660 1114 CDD PAS 749 859 IPR000014 -
Vimu10g00660 1114 SMART HisKA_10 879 944 IPR003661 GO:0000155|GO:0007165
Vimu10g00660 1114 Gene3D - 200 550 IPR029016 -
Vimu10g00660 1114 SUPERFAMILY GAF domain-like 397 575 - -
Vimu10g00660 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 186 IPR035965 -
Vimu10g00660 1114 CDD HATPase_Phy-like 990 1096 IPR044767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00660 Vimu-Chr10 5640457 5644796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00660 15 1098 Histidine Kinase Gene Family AT4G18130 62.647 0.0 1447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00660 K12123 - gmx:100808192 2063.11