Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01786 ATGGGAATTCAGAAATATATGGTTGTCATTAAATTTAGTTTTTGTGTTCTTTTAGTTTTCCATCTTGTAGCAGCAGTTAGCTTTGTAGTAAAGAAGGATACACAAGATGGTTTTGATAGAGAACTATTTGATTCAGTGTCTGGATTGTTCGACGACGAGCACACGGCAAAGGTATTACGGACCAGATGCTGTGAAGATTTTATTCATTTAAAGGAAGAGGTTGGATATCGTGATTTATGCCTCCCACTGGAATTCTATGCTAGTACCAATAAACTTAGTCCCACGATTCAACCTTTTGCACAAACAGAAATCCAAAAATTGCATGGGGCTTTCCATCCTCACACCAAGGAAAACTTTCTTCATTGTTTGAGAAAAAATAATCTCCAATTAAGTGTCTTAAGAGAAGAGGATGATTCCAAGATACGGCATGTCACTAATACAGGATATCTGTTTTCTATTCTTAGAAGAAATTCAGGCCGTGTTTTGCTCCAACACATATCAGAACCACCTAGTTCAGGCCCTGCAGCTGGATCACCTGAACCTAGTCTCACTCCATCACCTGAGCCCAGTCTGACTCAATCGCCTGGACCCAGTTTATCTCCATCGCCTGCTCCAATGCCTCTACTTCCTCAACCCCCGTCTCCTCCTTCGTCACCAAGCCCATTTTTTCCAAGACTGACACCGCCAGACGCTTCTGATATTTCTGCCCCTCCATCTCCTGACACGGACGGGGAGGAAGATAAGTCAAGTAAAAAGAGAACGGTTGTTCTTTCTGTAGTAATAACTTTATCAGTGATATTTATAGCTGCAGCATTATTCTTTTTATGCTTTCGTAAGAATGCCCGGCTTAGACGAAATGATGAGAGGCCTCTTCTTAGCTTGAGCATGAATGACTATTCTTTTGGTCCTTCCGATCACACTTTTGGAAATCCCACAAAAGGGGAGAAACATGGGTTTCAGTCATCAAGTAATAATTTAGTAGACAACAAGAAGACCTCACTGCAAGAAAATCAATCAATAGGAGCTCTTAGTACTGCCGGATCACCATTTGAATTGAAACTTCCTCCCGGGAGAGTGGGAACTGTCCATTCTGGAATGCCACCTTTAAGACCTCCTCCAGGTAGGATGAATCCTCTTCCGCCGGAACCACCTTCATTTAGGCCTTCTAGTAATACTAATGTCGCTGCGGCTGCTGCACCTCCTCCTCCTCAACAGTCTGGTGTTGGTAATGCACGACCTCCTGCTGCTCCTTCACCACCACAATCAACACTATCTGGTGTCGCACCTGGTCCTCCTCGTCCTCCACTACCCCCTGGTCCGCCTGGTTCCACCCGTCCTCCACCATCCCCAGCACCACCTGGTGCCACCCGTCCTCCACCATCCCCAGCACCACCTGGTTCTAAACCCGGTCCCCCTCCTCCACCACCACCAGCACCGCTTGGTGCTAAACCTGGTTCTCGTCCACCTCCTCCTCCTCCTCCTAAGAGCGGTGTAGCTCCTCCTCGACCACCAATTGGCCCGAAGGCTAGTGGACCAAAAGCTTCATTGAATTCTGAAGCAGCTGGAGCTGATAGTTCTAAAGCCAAACTAAAGCCATTTTTCTGGGACAAGGTTTCAGCAAATTCAGATCAATCAATGGTTTGGAATGAGATCAAATCAGGATCGTTCCAGTTTAACGAAGAGATGATAGAGTCACTTTTTGGTTATAATGCTGTAAATAAAAACAATGGTCAAAGACAGAAAGAATCTTCCTCCTCCCAAGACCCTTCACCCCAGTATATCCAGATCGTTGACAAAAAGAGAGCACAAAATTTGTTAATTCTGTTGCGAGCATTGAATGTAACAATGGAAGAAGTTTGCGATGCTCTCTATGAAGGAAATGAGCTACCGCCGGAGTTCCTTCAAACCTTGTTGAAGATGGCACCGACATCTGATGAAGAACTTAAGCTTCGACTTTTTAGTGGTGATCTGTCTCAACTTGGGCCTGCTGACAGTTTCCTTAAAGCTCTGGTTGACATTCCCTTTGCTTTTAAGCGAATGGAAACACTGCTTTTTAAGGGAACATTTAAAGAGGAACTCACTACTACTAAGGAGTCTTTTGCAGTTTTAGAGGTTGCTTGTAAGGAACTAAGAAACAGCCGTCTGTTCCTCAAACTTCTTGAAGCTGTTCTCAAAACTGGAAACCGTATGAACGACGGAACATACCGTGGCGGTGCACAAGCATTTAAACTTGATACACTTTTGAAATTATCTGATGTAAAAGGAACAGATGGCAAGACTACACTCTTACACTTTGTCGTTCAAGAGATTATCCGCTCCGAGGGCATAAAAGCTGCCCGAGCAGCGAAAGAGAGCCAGGGTTTGTCCAGTATTAAAACAGACGAACTTCTTGAGGATAATCCGCGTGAAACTGAAGAAGACCATTACCGCGAACTTGGTCTTGAGGTAGTTTCACATTTGAGCAGTGAGCTTGAAAATGTTAAAAGGGGATCTGTTCTAGATGCGGACAGCTTAACAGCAACTGCTGCCAAACTTGGCCACGGTCTCTTGAAAGCCAAAGAGTTACTGAACAAAAACCTGAAGAATGTGGAGGATGATAGAGGGTTTCGCGAGACATTGGAAAGTTTTGTCCAGGATGCAGAGGCTGATGTTATGAAACTGCTTGAAGACGAGAAGAAAATCACGGCTCTGGTGAAGAGCACTGGCGATTACTTTCACGGGAATGCTGCAAAGGATGATGGCTTGCGATTGTTTGTAGTAGTGAGAGACTTCTTAATAATGCTTGATAAGGTATGCAAGGAGGTGAGAGATGCACAGAAGAAACCAGCAAAACCTCAAAAACAGGAAACAACTTCACGGGGATTGTCTCCGCCTGATACGCGTCCATTGCCTTCTGATTATCGTCAGCGGCTTTTTCCAGCTATAGCTGAAAGGAGGATAGATGACCTTAGTTCAGATGATGAGAGTCCTTAG 2973 0.4474 MGIQKYMVVIKFSFCVLLVFHLVAAVSFVVKKDTQDGFDRELFDSVSGLFDDEHTAKVLRTRCCEDFIHLKEEVGYRDLCLPLEFYASTNKLSPTIQPFAQTEIQKLHGAFHPHTKENFLHCLRKNNLQLSVLREEDDSKIRHVTNTGYLFSILRRNSGRVLLQHISEPPSSGPAAGSPEPSLTPSPEPSLTQSPGPSLSPSPAPMPLLPQPPSPPSSPSPFFPRLTPPDASDISAPPSPDTDGEEDKSSKKRTVVLSVVITLSVIFIAAALFFLCFRKNARLRRNDERPLLSLSMNDYSFGPSDHTFGNPTKGEKHGFQSSSNNLVDNKKTSLQENQSIGALSTAGSPFELKLPPGRVGTVHSGMPPLRPPPGRMNPLPPEPPSFRPSSNTNVAAAAAPPPPQQSGVGNARPPAAPSPPQSTLSGVAPGPPRPPLPPGPPGSTRPPPSPAPPGATRPPPSPAPPGSKPGPPPPPPPAPLGAKPGSRPPPPPPPKSGVAPPRPPIGPKASGPKASLNSEAAGADSSKAKLKPFFWDKVSANSDQSMVWNEIKSGSFQFNEEMIESLFGYNAVNKNNGQRQKESSSSQDPSPQYIQIVDKKRAQNLLILLRALNVTMEEVCDALYEGNELPPEFLQTLLKMAPTSDEELKLRLFSGDLSQLGPADSFLKALVDIPFAFKRMETLLFKGTFKEELTTTKESFAVLEVACKELRNSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARAAKESQGLSSIKTDELLEDNPRETEEDHYRELGLEVVSHLSSELENVKRGSVLDADSLTATAAKLGHGLLKAKELLNKNLKNVEDDRGFRETLESFVQDAEADVMKLLEDEKKITALVKSTGDYFHGNAAKDDGLRLFVVVRDFLIMLDKVCKEVRDAQKKPAKPQKQETTSRGLSPPDTRPLPSDYRQRLFPAIAERRIDDLSSDDESP 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01786 990 PANTHER FORMIN-RELATED 150 977 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vifa6g01786 990 MobiDBLite consensus disorder prediction 936 968 - -
Vifa6g01786 990 Pfam Formin Homology 2 Domain 525 928 IPR015425 -
Vifa6g01786 990 MobiDBLite consensus disorder prediction 165 252 - -
Vifa6g01786 990 MobiDBLite consensus disorder prediction 346 526 - -
Vifa6g01786 990 ProSiteProfiles Formin homology-2 (FH2) domain profile. 520 954 IPR015425 -
Vifa6g01786 990 MobiDBLite consensus disorder prediction 174 235 - -
Vifa6g01786 990 MobiDBLite consensus disorder prediction 413 508 - -
Vifa6g01786 990 Gene3D Formin, FH2 domain 527 955 IPR042201 -
Vifa6g01786 990 SUPERFAMILY Formin homology 2 domain (FH2 domain) 591 950 - -
Vifa6g01786 990 MobiDBLite consensus disorder prediction 305 326 - -
Vifa6g01786 990 SMART it6_source 520 946 IPR015425 -
Vifa6g01786 990 MobiDBLite consensus disorder prediction 366 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01786 Vifa-Chr6 679696653 679700856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01786 235 981 FH2 protein (formin) Gene Family AT5G54650 50.065 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01786 - - gmx:100776210 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01786 6 679696653 679700856 Vifa6g01786 6 679696653 679700856 ECH
Vifa1g02669 1 419201096 419206058 Vifa6g01786 6 679696653 679700856 PCT