Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04167 ATGGACCCAGAAGACTGGGATTTGAGCGCCGAAGACCTCGATTCCCTTGAAAGAGACGCTTTTCAGAAAATTGCTCAACTCCGCTCCCACCCTCCTCCTCCTCCTTCAAACCCCTCTCCCGCTTCACGTTTTCAAAGAGTTGATGCTTTGCCTCAAGGAGCTAGAACACTCCCCCCTTCATTGAAACCAGTGACAACAAACAACACTAACAAGACAGATGAACAAGTTAAAGAATTGACAAAAGCTTCTGTCAAATTTTTTCTTCATTCAAGTGGAAATATTGCAGCAAAGTTCCTATATGACCAGGTAATAGTTGCTGCTTTTAGAAGAATCCCTAAATCTATTTGGAATGCTAAAGAACGGTTATGGTTGTTCCCTCTATCTTCTTTGTCAGAAGCAGAAAAGGTTCTCAGAGAAATATCTGGTTATAATGTTCAGGTGGAGAACTTAGATCCCTTAGTGCAGCGTGCTATTGCTGCTGCCACTTCTGTTCCCGATCTTCGAGATCAATATGATAAGATCCCTGACTATGTTGAAACAAAGCTTTTGCCATTTCAGCGAGACGGTATAAGGTTTATATTGCAGCATGGATGTCGTGCTTTTTTAGCGGATGAAATGGGACTGGGGAAAACGTTGCAGGCCATTTCTGTAGCTGCATGTGTTCAGGATTCTTGGCCTGTTCTCATTCTCACGCCATCTGCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATCCTTGTTGTCTTATCTCAAAGTGGTGGGTCAAATAGAGGAGGTTTCAATATAGTATCTCCTCCAAGTGCCAAAAACAGCATTCATCTGGATGGACTATTCAACATTATCTCATATGATATGGTGGCAAAGCTACAAAATACGCTTATGGAGTCTGACTTTAAGGTTGTAATTGCTGATGAGTCACACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCAGTTATAAAGAAAGCTAAATATGCAATATTGCTTAGTGGAACTCCTGCTTTATCCCGACCAATTGAACTATTCAAACAGCTGGAAGCTTTGTATCCTGATGTGTATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGATTTTTTGGACTTTATCAAGGGGCAAGTAATCATGAAGAATTGCACAATTTGATGAAGGCAACATCGATGATTCGGAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTTAAGCGTAGGCAACAAGTCTTCCTAGATTTGGCTGACAAGGACATGAAGCAAATTAATGCTCTATTTCGGGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTACTGAAAAGAATCTTATTAACAAGATTTATACTGATTCTGCTGAAGCCAAGATTCCCGCTGTTCTTGATTATCTTGGAACTGTAATCGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCTATCAATGATTGATGCAATACACGAGTTTCTTCTGAAAAAAAAGGTTGGTTGCATCCGGATTGATGGAGGTACACCTTCTGGATCAAGGCAACAGTTGGTTACAGAGTTTCAGGAAAAAGATTCTATCAAGGCAGCAGTGCTATCTATCAAAGCTGGAGGTGTCGGGTTAACATTGACCGCTGCCAGCACCGTCCTCTTTGCAGAATTGTCTTGGACTCCTGGTGATCTAATTCAGGCTGAAGACCGTGTTCATAGAATTGGACAGGTGTCTTCAGTAAATATATACTACTTGCTTGCAAATGACACAGTTGATGATATCATGTGGGACGTAGTGCAAAGCAAACTGGACAATTTGGGACAGATGCTTGATGGCCATGAGAACACCTTAAAGGTCTCAGATGATCAACCACTACTGAGAAGCCCTGCAAAGTACTTAAAGGTCTCAGATGATCAACCGCCAGTGAGAAGCCCTGCAAAGCAGAAAACACTTGATCATTTTGTCAGAAGATGTGACAACAGCACGAGTGGATTGGAACATGGGTCATCCCCCAAACGTCCCCGGTACTGA 2082 0.4183 MDPEDWDLSAEDLDSLERDAFQKIAQLRSHPPPPPSNPSPASRFQRVDALPQGARTLPPSLKPVTTNNTNKTDEQVKELTKASVKFFLHSSGNIAAKFLYDQVIVAAFRRIPKSIWNAKERLWLFPLSSLSEAEKVLREISGYNVQVENLDPLVQRAIAAATSVPDLRDQYDKIPDYVETKLLPFQRDGIRFILQHGCRAFLADEMGLGKTLQAISVAACVQDSWPVLILTPSALRLQWASMIQQWLNIPSSDILVVLSQSGGSNRGGFNIVSPPSAKNSIHLDGLFNIISYDMVAKLQNTLMESDFKVVIADESHFLKNAQAKRTTASLPVIKKAKYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGFFGLYQGASNHEELHNLMKATSMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFRELEMVKAKIKAAKSQEEAESLKFTEKNLINKIYTDSAEAKIPAVLDYLGTVIEAGCKFLIFAHHLSMIDAIHEFLLKKKVGCIRIDGGTPSGSRQQLVTEFQEKDSIKAAVLSIKAGGVGLTLTAASTVLFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIMWDVVQSKLDNLGQMLDGHENTLKVSDDQPLLRSPAKYLKVSDDQPPVRSPAKQKTLDHFVRRCDNSTSGLEHGSSPKRPRY 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04167 693 Coils Coil 435 455 - -
Vifa4g04167 693 Pfam Helicase conserved C-terminal domain 484 592 IPR001650 -
Vifa4g04167 693 FunFam Chromatin remodeling factor18 441 687 - -
Vifa4g04167 693 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 484 635 IPR001650 -
Vifa4g04167 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 400 IPR027417 -
Vifa4g04167 693 CDD DEXHc_HARP_SMARCAL1 182 406 - -
Vifa4g04167 693 SMART helicmild6 509 592 IPR001650 -
Vifa4g04167 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 639 IPR027417 -
Vifa4g04167 693 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 679 - -
Vifa4g04167 693 FunFam Chromatin remodeling factor18 155 430 - -
Vifa4g04167 693 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 364 IPR014001 -
Vifa4g04167 693 Pfam SNF2-related domain 196 460 IPR000330 GO:0005524|GO:0140658
Vifa4g04167 693 ProSiteProfiles HARP domain profile. 75 152 IPR010003 -
Vifa4g04167 693 MobiDBLite consensus disorder prediction 653 693 - -
Vifa4g04167 693 CDD SF2_C_SNF 479 603 - -
Vifa4g04167 693 MobiDBLite consensus disorder prediction 23 44 - -
Vifa4g04167 693 Gene3D - 443 677 IPR027417 -
Vifa4g04167 693 Gene3D - 154 431 IPR038718 -
Vifa4g04167 693 SMART ultradead3 178 372 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04167 Vifa-Chr4 1325146591 1325154484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04167 479 619 RAD5 or RAD16-like Gene Family AT5G22750 34.043 1.32e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa4g04167 SNF2_N 1.3e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04167 K14440 - gmx:100797654 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04167 4 1325146591 1325154484 Vifa4g04167 4 1325146591 1325154484 ECH