Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00413 ATGTGTGGAGGTGCGATTATCTCCGACTTCATTCCGGCGGGGCCCGCCGGCCGGTCCCGACGCGTGACCCCCGAAATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGCCGCTGCTGGACGATGATTTCGAGGCGGGGTTCAGGGAATTCAAGGATGACTCTGAAATCGAGGATGATGAGGATGAAGAGGACAGTTTGATGGTGGTTGGTGTGAAGAAGTCCGTTGGCTTTTCTCGCCCCAACAAGACCTCTAAGTCTCTCTCTCGTGGATCAACAACTGTAAAATCTGGGGAATCAAAAGGGCAAATTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAATATAGAGGAATTCGTCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAGGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGCTGTTTCTTCAAAACGCCTCAAGGTGATTCCAGAGGAAAGCCTGAGCTCTGTGAAGCCAAAAATGAACCACTTGTTCAACTTTGGTGACAATCTGGAGGACTACTACAGCCCTGTCGATCAGGTGGAACAGAAGCCATTGGTTAACCAGTATGTGAACCCTGGTCCATTCACTGGAAACTGTGTTCAGCTCTCACCAGTTACTCAATCTGCTGATGTTACTGCTTATTTCAGTTCTGAGCATTCGAGCAATTCATTTGATTACTCTGACCTTGGATGGGGTGAACAAGCTCCAAGGACCCCTGAAATCTCCTCCATTCTTTCTGCTCCTCTGGAGGGTGAATCTCAGATTCAGAAGAAAGACAGTGAAGACATGATGCCTGTGCAAGATGATTCTGCAAAGACACTTTCTGAGGAGCTTGCAGACATAGAATCCCAGCTGAAGTTCTTCGAGGCCCCTTTGTTTGATGGAAGCTGGGGTGATGCTTCATTGGCTTCTCTGCTAGGCAGTGATGCAACTCAGGATGCTGGAAACCCTTTGAACCTTTGGAGCTTCGACGACCTGCCATCAATGGCAGGCGTTTTCTGA 1116 0.4964 MCGGAIISDFIPAGPAGRSRRVTPEILWPNLRKRFSKPLLDDDFEAGFREFKDDSEIEDDEDEEDSLMVVGVKKSVGFSRPNKTSKSLSRGSTTVKSGESKGQIEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSAVSSKRLKVIPEESLSSVKPKMNHLFNFGDNLEDYYSPVDQVEQKPLVNQYVNPGPFTGNCVQLSPVTQSADVTAYFSSEHSSNSFDYSDLGWGEQAPRTPEISSILSAPLEGESQIQKKDSEDMMPVQDDSAKTLSEELADIESQLKFFEAPLFDGSWGDASLASLLGSDATQDAGNPLNLWSFDDLPSMAGVF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00413 371 MobiDBLite consensus disorder prediction 79 100 - -
Vian9g00413 371 SUPERFAMILY DNA-binding domain 115 173 IPR016177 GO:0003677
Vian9g00413 371 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
Vian9g00413 371 Pfam AP2 domain 115 164 IPR001471 GO:0003700|GO:0006355
Vian9g00413 371 PANTHER DNA-BINDING DOMAIN 89 285 IPR044808 GO:0003700|GO:0009873
Vian9g00413 371 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Vian9g00413 371 CDD AP2 115 173 IPR001471 GO:0003700|GO:0006355
Vian9g00413 371 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Vian9g00413 371 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Vian9g00413 371 FunFam Ethylene-responsive transcription factor 2 114 173 - -
Vian9g00413 371 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
Vian9g00413 371 MobiDBLite consensus disorder prediction 79 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00413 Vian-Chr9 4021734 4024068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00413 1 371 AP2-EREBP Transcription Factor Family AT1G53910 43.299 1.30e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian9g00413 AP2 4.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00413 K09286 - gmx:547957 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00413 9 4021734 4024068 Vian9g00413 9 4021734 4024068 ECH