Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01569 ATGTCTGTGCCATTGGAACAAGGCTATGTAGGGTTATCAGAGGTTTCTGCAATGGAAAGTTCTGACAAGTTTTCTACTAGTGGTGGCTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTACCAGGTTCCGAGTCACCGGAGAGAGATGGGGGTGTGGAAGAAAAAAATGGGCACCCTTTAGGCATGGTCAAGAATTTGGTGTCTGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGGGTTCTGGGAAATGGCTTCTCTCAGGGAATGGTGGATCTGAGGTGGATTTGGGAAAAGATTGTGGCTTGTTCTCACCAAGGGGTATTGGTGCTGGTGCTGCCAAGGCTGAGTCTGCCAACCAACAAATTTCTGTTGTAAAAGATAAAGTTCCTCTGCCTCCAAAACCGTTGAATGAGAAGAAACCTCAGATATCTGCTCCTACTGCAAAGGAACAGGTTGTGGGATGGCCACCAATTCGATCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAGAAGAATGATGATGATGCAGAAGCCAAGTCAGGGTGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAAACTTTGCCACTTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGACAATGTGGTTCTCATGGAGTTTCTGGTCGAGATAAGTTGAGTGAAAGTAGATTGATGGATCTGCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGGCTCATGCAAGAGGCTGAGGATAATGAAAAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGCAAAAGTCGCAACTAG 918 0.4553 MSVPLEQGYVGLSEVSAMESSDKFSTSGGLNLKATELRLGLPGSESPERDGGVEEKNGHPLGMVKNLVSGAKRGFSDTIDGGSGKWLLSGNGGSEVDLGKDCGLFSPRGIGAGAAKAESANQQISVVKDKVPLPPKPLNEKKPQISAPTAKEQVVGWPPIRSFRKNSMATQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLKNFATYMELSSALEKMFSCFTIRQCGSHGVSGRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTGSCKRLRIMKSSEAIGLAPRAMEKCKSRN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01569 305 ProSiteProfiles PB1 domain profile. 185 287 IPR000270 GO:0005515
Vian8g01569 305 MobiDBLite consensus disorder prediction 130 151 - -
Vian8g01569 305 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 30 292 IPR003311 GO:0005634|GO:0006355
Vian8g01569 305 MobiDBLite consensus disorder prediction 37 60 - -
Vian8g01569 305 Gene3D - 179 299 - -
Vian8g01569 305 SUPERFAMILY CAD & PB1 domains 182 286 - -
Vian8g01569 305 FunFam Auxin-responsive protein 180 297 - -
Vian8g01569 305 Pfam AUX/IAA family 35 296 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01569 Vian-Chr8 35226988 35229285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01569 187 303 B3 DNA Binding Superfamily AT1G19850 31.624 2.14e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian8g01569 AUX_IAA 1e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01569 K14484 - gmx:100803754 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01569 8 35226988 35229285 Vian8g01569 8 35226988 35229285 ECH
Vian1g04032 1 63373218 63375088 Vian8g01569 8 35226988 35229285 PCT