Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01854 ATGGCCAGAAAATCGCAGAAAACCCTCAAGAACACTGACACCAACAACAACACTGCAAAACGCACACGCAAAACCGTTCCGAGAGACTCACCACCACAACGAAGTTCAATCTATAGGGGTGTCACAAGACATCGTTGGACTGGTCGGTATGAGGCTCATCTCTGGGACAAAAACTGTTGGAATGAATCGCAGAGCAAGAAAGGAAGACAAGGGGCGTATGATGATGAAGAAGCCGCGGCGCGTGCTTATGATTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTCCCATTAACAAATTATGAGGAGAAGCTCAAGGAAATGGAGGGTCAATCGAAAGAAGAATACATTGGATCCTTGAGAAGAAAAAGCAGTGGATTTTCTCGAGGAGTTTCAAAATACCGAGGTGTAGCAAGGTATTCCAACCTTGCTCTGTTTTGTTTGGAAAATACTAGACACCACCATAATGGAAGATGGGAAGCTCGAATTGGAAGGGTCTTGGGCAACAAATACCTGTATCTTGGAACATATGCTACACAAGAAGAGGCAGCAGCAGCATATGACATGGCAGCCATAGAATACAGAGGAGCTAATGCTGTTACAAACTTTGACGTGAGCCGTTATATCAATTGGCCAGGTCCTAAAAGTGAAGAAGAGCACAAAAATGTTGCTATAAATGAAAATGTAAACTCTAATGGCGATATTGAACTAGGATTTGTTTCACATGAACATGGTTCAATCACTGATGAGAACACAACAGAGCATGTAGCACAATCTACAGAGTCAAATCCTTCTCGTCGCACATTCCCAGAAGACATTCAAACAATTTTTGAGAGTCAAGGACCAGACATCTATACTGAAAATGATGATATCATTTTTGGTGATTTGGGTTCATTTGGGGCACCAATTTTTCATTTCGAGCTTGATGTTTAG 942 0.4225 MARKSQKTLKNTDTNNNTAKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQGAYDDEEAAARAYDLAALKYWGQDTILNFPLTNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARYSNLALFCLENTRHHHNGRWEARIGRVLGNKYLYLGTYATQEEAAAAYDMAAIEYRGANAVTNFDVSRYINWPGPKSEEEHKNVAINENVNSNGDIELGFVSHEHGSITDENTTEHVAQSTESNPSRRTFPEDIQTIFESQGPDIYTENDDIIFGDLGSFGAPIFHFELDV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01854 313 FunFam AP2-like ethylene-responsive transcription factor 36 102 - -
Vian7g01854 313 ProSiteProfiles AP2/ERF domain profile. 136 207 IPR001471 GO:0003700|GO:0006355
Vian7g01854 313 SMART rav1_2 136 213 IPR001471 GO:0003700|GO:0006355
Vian7g01854 313 SMART rav1_2 37 106 IPR001471 GO:0003700|GO:0006355
Vian7g01854 313 SUPERFAMILY DNA-binding domain 154 209 IPR016177 GO:0003677
Vian7g01854 313 CDD AP2 135 209 IPR001471 GO:0003700|GO:0006355
Vian7g01854 313 ProSiteProfiles AP2/ERF domain profile. 37 100 IPR001471 GO:0003700|GO:0006355
Vian7g01854 313 MobiDBLite consensus disorder prediction 7 21 - -
Vian7g01854 313 SUPERFAMILY DNA-binding domain 36 101 IPR016177 GO:0003677
Vian7g01854 313 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vian7g01854 313 PRINTS Ethylene responsive element binding protein signature 82 102 IPR001471 GO:0003700|GO:0006355
Vian7g01854 313 MobiDBLite consensus disorder prediction 1 38 - -
Vian7g01854 313 Pfam AP2 domain 37 92 IPR001471 GO:0003700|GO:0006355
Vian7g01854 313 Pfam AP2 domain 155 199 IPR001471 GO:0003700|GO:0006355
Vian7g01854 313 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 227 - -
Vian7g01854 313 Gene3D AP2/ERF domain 37 102 IPR036955 GO:0003700|GO:0006355
Vian7g01854 313 Gene3D AP2/ERF domain 135 209 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01854 Vian-Chr7 29338725 29342269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01854 33 211 AP2-EREBP Transcription Factor Family AT5G57390 67.033 2.94e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vian7g01854 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01854 K09285 - gmx:100807781 479.559