Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00213 ATGTCAGCAAACAATTCTTTGCACGTGGAATTATCGAAGAAGACTTCGTTTCTGGGATTGAAATTATGGGTTTTGATTGGGATTGGTGTTGGTGCTTTTATAGTTCTGATTCTTTGTGCATTATCTGTATGGGTGATGTTTCGGAGAAAGTCTAGGAGATCTCTGGACAAGTTCTCTTTGTCACAAATACCGCATGTCTCAAAAGACATCAGAGTTGACAAGGTTGGGGTGCAGACTTCTTATGATCAAGCAGAAAGTGTAGCTATTCCTGTTCATGACAAAGCAAGTGAGAACAATTCTGACAAGTTCTTAGTTCATTTGCGCAAAAGCAAATCCAGCGATGCTGATAATATCAGTCAGTGCAGCTCAGTTTATCATCACGAGAGAGGATTTAGTTCAATGTCAGGGGAAGAAGGAAGCTCCGGCACTGTTAAGAAGCAGTCTACATTGGCATTTGGAGGAGTGATAACTGCCTCTCCTCTAGTTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGTCACTGGTTCACACTAAGAGATCTGGAACTTGCAACTAGTCGCTTCTCTCCAGAAAATGTGATTGGTGAGGGTGGATATGGGGTTGTTTACAGGGGAAGATTGATCAATGGATCCGAGGTGGCAGTTAAGAAAATTCTTAACAACTTGGGACAAGCAGAGAAAGAGTTCAGGGTGGAAGTGGAAGCTATTGGCCATGTGAGACATAAAAATCTTGTGCGCTTACTTGGTTATTGCGTAGAAGGAGTTCACAGGTTACTGGTGTATGAATATGTGAACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGATACTTACCTGGGAAGCGCGGATGAAAGTTATAACTGGCACAGCCAAAGCACTGGCTTATTTACATGAAGCAATAGAACCGAAAGTCGTTCACCGGGATATCAAGTCTAGCAACATATTGATTGATACTGAGTTCAATGCAAAAGTTTCTGACTTTGGTTTGGCCAAACTTTTGGACTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACGTTTGGTTATGTGGCACCAGAATATGCCAATACGGGTTTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCAGTTACTGGAAGGGATCCTGTGGACTATTCACGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACGAGAAGGGCCGAGGAAGTTGTGGATTCAAGGCTTGAAGTGACACCATCAACACGTGCTTTAAAGCGTTCTCTTCTGGTTGCACTTAAGTGTGTTGATCCTGAAGCAGAAAAGAGGCCTAAAATGAGTCAGGTTGTGAGAATGCTTGAAGCCGATGAATATCCATTCCGAGAGGATCGAAGAAATAGAAAGAGCCGCACAGCCAGCATGGAAATTGAGTCTCTGAAGGATATTTCTGGCCCATCTGATGCTGAAAAGGTGAAGGGTTCTGAAGGCCATGCACCAGAAACAACTCAAGCGTAG 1533 0.4351 MSANNSLHVELSKKTSFLGLKLWVLIGIGVGAFIVLILCALSVWVMFRRKSRRSLDKFSLSQIPHVSKDIRVDKVGVQTSYDQAESVAIPVHDKASENNSDKFLVHLRKSKSSDADNISQCSSVYHHERGFSSMSGEEGSSGTVKKQSTLAFGGVITASPLVGLPEISHLGWGHWFTLRDLELATSRFSPENVIGEGGYGVVYRGRLINGSEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGAMSQQGILTWEARMKVITGTAKALAYLHEAIEPKVVHRDIKSSNILIDTEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAVTGRDPVDYSRPANEVNLVEWLKMMVGTRRAEEVVDSRLEVTPSTRALKRSLLVALKCVDPEAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDISGPSDAEKVKGSEGHAPETTQA 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00213 510 MobiDBLite consensus disorder prediction 488 502 - -
Vian6g00213 510 FunFam Putative receptor-like protein kinase 170 263 - -
Vian6g00213 510 CDD STKc_IRAK 194 460 - -
Vian6g00213 510 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
Vian6g00213 510 ProSiteProfiles Protein kinase domain profile. 188 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00213 510 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Vian6g00213 510 MobiDBLite consensus disorder prediction 466 510 - -
Vian6g00213 510 SMART serkin_6 188 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00213 510 PANTHER OS01G0323000 PROTEIN 1 482 - -
Vian6g00213 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Vian6g00213 510 FunFam Putative receptor-like serine/threonine-protein kinase 264 474 - -
Vian6g00213 510 MobiDBLite consensus disorder prediction 466 481 - -
Vian6g00213 510 Pfam Protein kinase domain 191 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00213 510 SUPERFAMILY Protein kinase-like (PK-like) 172 461 IPR011009 -
Vian6g00213 510 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00213 Vian-Chr6 5815067 5818043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00213 19 462 Trihelix Transcription Factor Family AT1G70460 40.222 2.39e-95 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vian6g00213 Pkinase 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00213 - - gmx:100813931 938.332